miRNA display CGI


Results 61 - 80 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 32951 1.12 0.000345
Target:  5'- cUGACGCCGCCCGCGAACCUCGAAGCCa -3'
miRNA:   3'- -ACUGCGGCGGGCGCUUGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 32625 0.68 0.43081
Target:  5'- cGACGUCGCUCGCc-ACCUgGAGGg- -3'
miRNA:   3'- aCUGCGGCGGGCGcuUGGAgCUUCgg -5'
16302 5' -58.8 NC_004084.1 + 31990 0.71 0.2778
Target:  5'- ---aGCCGCCagaGCGGGCCUgGAGGgCu -3'
miRNA:   3'- acugCGGCGGg--CGCUUGGAgCUUCgG- -5'
16302 5' -58.8 NC_004084.1 + 31643 0.69 0.403542
Target:  5'- cGACGuuGCgugggggaugauCCGCGAcCuCUCGAuGGCCg -3'
miRNA:   3'- aCUGCggCG------------GGCGCUuG-GAGCU-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 31621 0.68 0.459129
Target:  5'- gGACGCCGUCuUGCGAuuuuuCCUCGuggaAGGUa -3'
miRNA:   3'- aCUGCGGCGG-GCGCUu----GGAGC----UUCGg -5'
16302 5' -58.8 NC_004084.1 + 31508 0.68 0.456252
Target:  5'- aGuCGCCGCCuccacuauCGCGAuggaugccgcgaucGCCUCGGAGg- -3'
miRNA:   3'- aCuGCGGCGG--------GCGCU--------------UGGAGCUUCgg -5'
16302 5' -58.8 NC_004084.1 + 31283 0.66 0.55978
Target:  5'- cGugGCCGgUCGCGggUCccuaUCGuugggguAGCCc -3'
miRNA:   3'- aCugCGGCgGGCGCuuGG----AGCu------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 31207 0.81 0.05745
Target:  5'- cGACGUCG-UCGCGAACCUCGAGGUa -3'
miRNA:   3'- aCUGCGGCgGGCGCUUGGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 31075 0.67 0.478548
Target:  5'- aGACGUCGUccggcccaCCGCGucCCUCGAacgugaacGGUCg -3'
miRNA:   3'- aCUGCGGCG--------GGCGCuuGGAGCU--------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 30847 0.72 0.251683
Target:  5'- cGACGCUGCCUccugGCGAccguCCggGAGGCCc -3'
miRNA:   3'- aCUGCGGCGGG----CGCUu---GGagCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 30575 0.68 0.468787
Target:  5'- cGGCGaCgGUCgGCGAACCggagCGggGUg -3'
miRNA:   3'- aCUGC-GgCGGgCGCUUGGa---GCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 30337 0.66 0.570242
Target:  5'- uUGACaugaGCaa-CCGCG-ACCUCGAggaGGCCg -3'
miRNA:   3'- -ACUG----CGgcgGGCGCuUGGAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 30231 0.69 0.368932
Target:  5'- aGGCGauGUCCGCGGcgACgUCGAacaGGCCg -3'
miRNA:   3'- aCUGCggCGGGCGCU--UGgAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 30125 0.7 0.352406
Target:  5'- --uCGCCGCCCcgaucGCGAGaCUcccguccacgagUCGAAGCCg -3'
miRNA:   3'- acuGCGGCGGG-----CGCUU-GG------------AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 30046 0.75 0.162555
Target:  5'- gGGgGCCGCUCGCGucguugugccAGCCgUCGAGGCUg -3'
miRNA:   3'- aCUgCGGCGGGCGC----------UUGG-AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 29479 0.74 0.190212
Target:  5'- cGACGCUGUCgaCGCGcuCCcCGAGGCCg -3'
miRNA:   3'- aCUGCGGCGG--GCGCuuGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 29399 0.67 0.518534
Target:  5'- gUGAUGCCGCCCuCGAuggGCUccugcaUCGcGGUCa -3'
miRNA:   3'- -ACUGCGGCGGGcGCU---UGG------AGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 29350 0.68 0.468787
Target:  5'- cGACGCC-CCCgaGCGGGCggUCGcGGCCu -3'
miRNA:   3'- aCUGCGGcGGG--CGCUUGg-AGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 29226 0.67 0.528742
Target:  5'- cGACGuuGUUCGCGGGCgaguaCUCGucGCg -3'
miRNA:   3'- aCUGCggCGGGCGCUUG-----GAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 29182 0.7 0.328615
Target:  5'- gGGCGCgacgaguacuCGCCCGCGAACaacgUCGAcGCg -3'
miRNA:   3'- aCUGCG----------GCGGGCGCUUGg---AGCUuCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.