Results 81 - 100 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16302 | 5' | -58.8 | NC_004084.1 | + | 29148 | 0.66 | 0.55978 |
Target: 5'- cUGGCGCUGCCgGgCGuacAACCUgGuucGAGCCn -3' miRNA: 3'- -ACUGCGGCGGgC-GC---UUGGAgC---UUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29067 | 0.71 | 0.284658 |
Target: 5'- -cGCGaCCGCCCGCucggGGGCgUCGucGCCg -3' miRNA: 3'- acUGC-GGCGGGCG----CUUGgAGCuuCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28992 | 0.67 | 0.478548 |
Target: 5'- cGACGUCGgccugaugaCCGCGAugCa-GGAGCCc -3' miRNA: 3'- aCUGCGGCg--------GGCGCUugGagCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28846 | 0.66 | 0.54937 |
Target: 5'- cGACGCCcaCCCgGCGAuggcCCUCaacGGCCu -3' miRNA: 3'- aCUGCGGc-GGG-CGCUu---GGAGcu-UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28739 | 0.72 | 0.258017 |
Target: 5'- -cGCGaCCGCgUCGCGAACCccCGGAGCUa -3' miRNA: 3'- acUGC-GGCG-GGCGCUUGGa-GCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28696 | 0.7 | 0.360603 |
Target: 5'- ---gGUCGCCCGgaCGAucuCCUCGAacGGCCg -3' miRNA: 3'- acugCGGCGGGC--GCUu--GGAGCU--UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28419 | 0.68 | 0.440137 |
Target: 5'- cUGACGUCGUCaccaGCGA-CCaggUCGAcGCCg -3' miRNA: 3'- -ACUGCGGCGGg---CGCUuGG---AGCUuCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28379 | 0.71 | 0.306033 |
Target: 5'- cGACGCgagCGgccCCCGCGAGaCCUCGAucGGCg -3' miRNA: 3'- aCUGCG---GC---GGGCGCUU-GGAGCU--UCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28188 | 0.66 | 0.55978 |
Target: 5'- cGACGUCG-CCGCGGacaucGCCUCc-GGUCa -3' miRNA: 3'- aCUGCGGCgGGCGCU-----UGGAGcuUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28074 | 0.68 | 0.421601 |
Target: 5'- cGACGCCGUCgGCc-ACCUCGccgacGGUCa -3' miRNA: 3'- aCUGCGGCGGgCGcuUGGAGCu----UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28007 | 0.71 | 0.306033 |
Target: 5'- cGuCGCCGCCCGUcGACgUCGGcuCCa -3' miRNA: 3'- aCuGCGGCGGGCGcUUGgAGCUucGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 27654 | 0.67 | 0.528742 |
Target: 5'- gGAUGCCGCCgGgGAuccgguuCCUCGucaucuuGCUg -3' miRNA: 3'- aCUGCGGCGGgCgCUu------GGAGCuu-----CGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 27196 | 0.73 | 0.233449 |
Target: 5'- cGACGCUGaaUGCGuACCUCGAGGUUc -3' miRNA: 3'- aCUGCGGCggGCGCuUGGAGCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 24312 | 0.67 | 0.518534 |
Target: 5'- gGGCGUuaauuCGCCCGCacguGCCUucaCGAGGCg -3' miRNA: 3'- aCUGCG-----GCGGGCGcu--UGGA---GCUUCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 24177 | 0.68 | 0.421601 |
Target: 5'- cGACGCU-CCCGCacACCUaCGAcgacAGCCg -3' miRNA: 3'- aCUGCGGcGGGCGcuUGGA-GCU----UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 23590 | 0.69 | 0.41251 |
Target: 5'- cGACGUCGUgcuccgCCGgGAACugcgCUCGAAGCg -3' miRNA: 3'- aCUGCGGCG------GGCgCUUG----GAGCUUCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 23275 | 0.68 | 0.468787 |
Target: 5'- gGAUGUacCCCGaGGACCUCGAcGCCc -3' miRNA: 3'- aCUGCGgcGGGCgCUUGGAGCUuCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 23078 | 0.7 | 0.336412 |
Target: 5'- cGACGCgacgagguggaCGUCgGCG-ACCUCGGauAGCCa -3' miRNA: 3'- aCUGCG-----------GCGGgCGCuUGGAGCU--UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 22857 | 0.72 | 0.26448 |
Target: 5'- gUGAUGCuCGacgaacCCCGUGAGaucacaCUCGAGGCCa -3' miRNA: 3'- -ACUGCG-GC------GGGCGCUUg-----GAGCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 22837 | 0.66 | 0.580752 |
Target: 5'- cGA-GCCGCCgagGCGAACgUCGuuguaGAGCUg -3' miRNA: 3'- aCUgCGGCGGg--CGCUUGgAGC-----UUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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