miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 299 0.7 0.344342
Target:  5'- cGACGaCCGCCgaCGaGAACC-CGAAGCa -3'
miRNA:   3'- aCUGC-GGCGG--GCgCUUGGaGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 48171 0.73 0.221919
Target:  5'- gGACGCCGaCCGCGAcucaccaggcgACCUC-AAGCg -3'
miRNA:   3'- aCUGCGGCgGGCGCU-----------UGGAGcUUCGg -5'
16302 5' -58.8 NC_004084.1 + 45534 0.73 0.232273
Target:  5'- gGACGCCGggauggguuggCGCGAggACCUCGAAGCg -3'
miRNA:   3'- aCUGCGGCgg---------GCGCU--UGGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 17063 0.72 0.251683
Target:  5'- cUGACGUCGCaaGCGGugUUCGAGaCCg -3'
miRNA:   3'- -ACUGCGGCGggCGCUugGAGCUUcGG- -5'
16302 5' -58.8 NC_004084.1 + 22857 0.72 0.26448
Target:  5'- gUGAUGCuCGacgaacCCCGUGAGaucacaCUCGAGGCCa -3'
miRNA:   3'- -ACUGCG-GC------GGGCGCUUg-----GAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 7432 0.72 0.271074
Target:  5'- cGAUGCCGacggUgGCGAGaCCUCGGAGUCc -3'
miRNA:   3'- aCUGCGGCg---GgCGCUU-GGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 29067 0.71 0.284658
Target:  5'- -cGCGaCCGCCCGCucggGGGCgUCGucGCCg -3'
miRNA:   3'- acUGC-GGCGGGCG----CUUGgAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 47181 0.71 0.291649
Target:  5'- gGAUGCUGaCCGgGAcggcuUCUCGAGGCCa -3'
miRNA:   3'- aCUGCGGCgGGCgCUu----GGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 468 0.71 0.298774
Target:  5'- gGACGuuGCCCGguuCGucGCCUCGAuccuGCUg -3'
miRNA:   3'- aCUGCggCGGGC---GCu-UGGAGCUu---CGG- -5'
16302 5' -58.8 NC_004084.1 + 18823 0.73 0.205537
Target:  5'- cGACGCCagacaagcgcGCCCG-GGACCUCGucgacGAGCUg -3'
miRNA:   3'- aCUGCGG----------CGGGCgCUUGGAGC-----UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 50224 0.74 0.180561
Target:  5'- cGACGCCaUCCGCGAACCccacUCuGAGGCg -3'
miRNA:   3'- aCUGCGGcGGGCGCUUGG----AG-CUUCGg -5'
16302 5' -58.8 NC_004084.1 + 44643 0.75 0.1759
Target:  5'- gGACGCgaucuccgagccCGCCCaGCGcGACCUCGAgggcgAGCCg -3'
miRNA:   3'- aCUGCG------------GCGGG-CGC-UUGGAGCU-----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 31207 0.81 0.05745
Target:  5'- cGACGUCG-UCGCGAACCUCGAGGUa -3'
miRNA:   3'- aCUGCGGCgGGCGCUUGGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 57412 0.79 0.082537
Target:  5'- cGACGUCGCCgGCGAG-CUCGAGGUg -3'
miRNA:   3'- aCUGCGGCGGgCGCUUgGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 10915 0.79 0.092169
Target:  5'- aGGCGCUGCCaCuCGAggGCCUCGAGGUCa -3'
miRNA:   3'- aCUGCGGCGG-GcGCU--UGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 36161 0.76 0.141948
Target:  5'- gUGACGCCGCauuCCGCGAgaucuucACCgUUGAAGCg -3'
miRNA:   3'- -ACUGCGGCG---GGCGCU-------UGG-AGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 19958 0.75 0.154171
Target:  5'- cGACaCgGUCuCGCGAuCCUCGAGGCCg -3'
miRNA:   3'- aCUGcGgCGG-GCGCUuGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 52215 0.75 0.154171
Target:  5'- gGGCGUCGguCUCGCGAGCCUCGAucgagacgAGCUc -3'
miRNA:   3'- aCUGCGGC--GGGCGCUUGGAGCU--------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 30046 0.75 0.162555
Target:  5'- gGGgGCCGCUCGCGucguugugccAGCCgUCGAGGCUg -3'
miRNA:   3'- aCUgCGGCGGGCGC----------UUGG-AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 39611 0.75 0.1759
Target:  5'- gGACGUgGCCgGCGAcguCCUCGAcgAGUCg -3'
miRNA:   3'- aCUGCGgCGGgCGCUu--GGAGCU--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.