miRNA display CGI


Results 41 - 60 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 19958 0.75 0.154171
Target:  5'- cGACaCgGUCuCGCGAuCCUCGAGGCCg -3'
miRNA:   3'- aCUGcGgCGG-GCGCUuGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 36161 0.76 0.141948
Target:  5'- gUGACGCCGCauuCCGCGAgaucuucACCgUUGAAGCg -3'
miRNA:   3'- -ACUGCGGCG---GGCGCU-------UGG-AGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 10915 0.79 0.092169
Target:  5'- aGGCGCUGCCaCuCGAggGCCUCGAGGUCa -3'
miRNA:   3'- aCUGCGGCGG-GcGCU--UGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 57412 0.79 0.082537
Target:  5'- cGACGUCGCCgGCGAG-CUCGAGGUg -3'
miRNA:   3'- aCUGCGGCGGgCGCUUgGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 31207 0.81 0.05745
Target:  5'- cGACGUCG-UCGCGAACCUCGAGGUa -3'
miRNA:   3'- aCUGCGGCgGGCGCUUGGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 17063 0.72 0.251683
Target:  5'- cUGACGUCGCaaGCGGugUUCGAGaCCg -3'
miRNA:   3'- -ACUGCGGCGggCGCUugGAGCUUcGG- -5'
16302 5' -58.8 NC_004084.1 + 22857 0.72 0.26448
Target:  5'- gUGAUGCuCGacgaacCCCGUGAGaucacaCUCGAGGCCa -3'
miRNA:   3'- -ACUGCG-GC------GGGCGCUUg-----GAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 8137 0.69 0.394699
Target:  5'- cGACGCCugGUCgGCagacgucgaGGACCUCGccGCCa -3'
miRNA:   3'- aCUGCGG--CGGgCG---------CUUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 6661 0.69 0.385981
Target:  5'- cGACGaagaGCCCGaCGAcGCCaCGAAGCUg -3'
miRNA:   3'- aCUGCgg--CGGGC-GCU-UGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 17159 0.69 0.385981
Target:  5'- gGACGaUCGCCgGCGA-CgUCGAAGgCg -3'
miRNA:   3'- aCUGC-GGCGGgCGCUuGgAGCUUCgG- -5'
16302 5' -58.8 NC_004084.1 + 39512 0.69 0.380812
Target:  5'- gGACGUcauCGUUCGCGAcguCCUCGAggaucuccucgugauGGCCa -3'
miRNA:   3'- aCUGCG---GCGGGCGCUu--GGAGCU---------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 28696 0.7 0.360603
Target:  5'- ---gGUCGCCCGgaCGAucuCCUCGAacGGCCg -3'
miRNA:   3'- acugCGGCGGGC--GCUu--GGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 54147 0.7 0.359778
Target:  5'- cUGACGCCGUUCGCGucgaagggcgagaAGCaaCGAGGCg -3'
miRNA:   3'- -ACUGCGGCGGGCGC-------------UUGgaGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 56854 0.7 0.352406
Target:  5'- gGAC-CCGUUCGCGGGCuccggCUCGAcGGCCg -3'
miRNA:   3'- aCUGcGGCGGGCGCUUG-----GAGCU-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 41192 0.7 0.352406
Target:  5'- gGACGaacacgaCGCCCGCGAcGCUggCGAAacGCCg -3'
miRNA:   3'- aCUGCg------GCGGGCGCU-UGGa-GCUU--CGG- -5'
16302 5' -58.8 NC_004084.1 + 299 0.7 0.344342
Target:  5'- cGACGaCCGCCgaCGaGAACC-CGAAGCa -3'
miRNA:   3'- aCUGC-GGCGG--GCgCUUGGaGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 468 0.71 0.298774
Target:  5'- gGACGuuGCCCGguuCGucGCCUCGAuccuGCUg -3'
miRNA:   3'- aCUGCggCGGGC---GCu-UGGAGCUu---CGG- -5'
16302 5' -58.8 NC_004084.1 + 47181 0.71 0.291649
Target:  5'- gGAUGCUGaCCGgGAcggcuUCUCGAGGCCa -3'
miRNA:   3'- aCUGCGGCgGGCgCUu----GGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 29067 0.71 0.284658
Target:  5'- -cGCGaCCGCCCGCucggGGGCgUCGucGCCg -3'
miRNA:   3'- acUGC-GGCGGGCG----CUUGgAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 7432 0.72 0.271074
Target:  5'- cGAUGCCGacggUgGCGAGaCCUCGGAGUCc -3'
miRNA:   3'- aCUGCGGCg---GgCGCUU-GGAGCUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.