miRNA display CGI


Results 61 - 80 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 3838 0.69 0.401764
Target:  5'- cGACGCCGacgacggcuccaCCG-GAACCUCGguGUCc -3'
miRNA:   3'- aCUGCGGCg-----------GGCgCUUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 6495 0.69 0.403542
Target:  5'- aGACGgCGCCCGaCGGuGCCgugaCGAAGUUc -3'
miRNA:   3'- aCUGCgGCGGGC-GCU-UGGa---GCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 44137 0.69 0.403542
Target:  5'- cGAaGCCGCUCGCGA-CgaCGAGGaCCu -3'
miRNA:   3'- aCUgCGGCGGGCGCUuGgaGCUUC-GG- -5'
16302 5' -58.8 NC_004084.1 + 41647 0.69 0.41251
Target:  5'- cGACGUcgaguucaaaCGCCgGgCGAACaacgucaUCGAGGCCg -3'
miRNA:   3'- aCUGCG----------GCGGgC-GCUUGg------AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 12420 0.68 0.421601
Target:  5'- gGAUGCCaaCCGCG--UCUCGAAcGCCg -3'
miRNA:   3'- aCUGCGGcgGGCGCuuGGAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 24177 0.68 0.421601
Target:  5'- cGACGCU-CCCGCacACCUaCGAcgacAGCCg -3'
miRNA:   3'- aCUGCGGcGGGCGcuUGGA-GCU----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 28074 0.68 0.421601
Target:  5'- cGACGCCGUCgGCc-ACCUCGccgacGGUCa -3'
miRNA:   3'- aCUGCGGCGGgCGcuUGGAGCu----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 22145 0.69 0.394699
Target:  5'- cGAUGaCUGaCCGCGAgcGCCUCGgcGCa -3'
miRNA:   3'- aCUGC-GGCgGGCGCU--UGGAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 8137 0.69 0.394699
Target:  5'- cGACGCCugGUCgGCagacgucgaGGACCUCGccGCCa -3'
miRNA:   3'- aCUGCGG--CGGgCG---------CUUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 299 0.7 0.344342
Target:  5'- cGACGaCCGCCgaCGaGAACC-CGAAGCa -3'
miRNA:   3'- aCUGC-GGCGG--GCgCUUGGaGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 41192 0.7 0.352406
Target:  5'- gGACGaacacgaCGCCCGCGAcGCUggCGAAacGCCg -3'
miRNA:   3'- aCUGCg------GCGGGCGCU-UGGa-GCUU--CGG- -5'
16302 5' -58.8 NC_004084.1 + 56854 0.7 0.352406
Target:  5'- gGAC-CCGUUCGCGGGCuccggCUCGAcGGCCg -3'
miRNA:   3'- aCUGcGGCGGGCGCUUG-----GAGCU-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 54147 0.7 0.359778
Target:  5'- cUGACGCCGUUCGCGucgaagggcgagaAGCaaCGAGGCg -3'
miRNA:   3'- -ACUGCGGCGGGCGC-------------UUGgaGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 28696 0.7 0.360603
Target:  5'- ---gGUCGCCCGgaCGAucuCCUCGAacGGCCg -3'
miRNA:   3'- acugCGGCGGGC--GCUu--GGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 39512 0.69 0.380812
Target:  5'- gGACGUcauCGUUCGCGAcguCCUCGAggaucuccucgugauGGCCa -3'
miRNA:   3'- aCUGCG---GCGGGCGCUu--GGAGCU---------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 17159 0.69 0.385981
Target:  5'- gGACGaUCGCCgGCGA-CgUCGAAGgCg -3'
miRNA:   3'- aCUGC-GGCGGgCGCUuGgAGCUUCgG- -5'
16302 5' -58.8 NC_004084.1 + 6661 0.69 0.385981
Target:  5'- cGACGaagaGCCCGaCGAcGCCaCGAAGCUg -3'
miRNA:   3'- aCUGCgg--CGGGC-GCU-UGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 32951 1.12 0.000345
Target:  5'- cUGACGCCGCCCGCGAACCUCGAAGCCa -3'
miRNA:   3'- -ACUGCGGCGGGCGCUUGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 34990 0.66 0.580752
Target:  5'- --uCGCCGCCUGCGugUCagCGAucAGCUg -3'
miRNA:   3'- acuGCGGCGGGCGCuuGGa-GCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 22837 0.66 0.580752
Target:  5'- cGA-GCCGCCgagGCGAACgUCGuuguaGAGCUg -3'
miRNA:   3'- aCUgCGGCGGg--CGCUUGgAGC-----UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.