Results 21 - 40 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16302 | 5' | -58.8 | NC_004084.1 | + | 50957 | 0.67 | 0.518534 |
Target: 5'- cGuCGCCGCUCGagucgccguCGGACUcCGAGGUCu -3' miRNA: 3'- aCuGCGGCGGGC---------GCUUGGaGCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 17571 | 0.66 | 0.539023 |
Target: 5'- cGACgGCCaGUUCGgGGACCUCGAccuCCg -3' miRNA: 3'- aCUG-CGG-CGGGCgCUUGGAGCUuc-GG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29148 | 0.66 | 0.55978 |
Target: 5'- cUGGCGCUGCCgGgCGuacAACCUgGuucGAGCCn -3' miRNA: 3'- -ACUGCGGCGGgC-GC---UUGGAgC---UUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 8184 | 0.66 | 0.580752 |
Target: 5'- cGACGCCucagagugggGUUCGCGGaugGCgUCGAGGUUg -3' miRNA: 3'- aCUGCGG----------CGGGCGCU---UGgAGCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29350 | 0.68 | 0.468787 |
Target: 5'- cGACGCC-CCCgaGCGGGCggUCGcGGCCu -3' miRNA: 3'- aCUGCGGcGGG--CGCUUGg-AGCuUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 10837 | 0.67 | 0.508406 |
Target: 5'- aGuCGCCaccgcGCUCGCGAAcguCCUCGAacGGCg -3' miRNA: 3'- aCuGCGG-----CGGGCGCUU---GGAGCU--UCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 12981 | 0.66 | 0.543154 |
Target: 5'- cGGCGUCagacauccccaucaCCCGUGAACgagUCGAGGCCc -3' miRNA: 3'- aCUGCGGc-------------GGGCGCUUGg--AGCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 22837 | 0.66 | 0.580752 |
Target: 5'- cGA-GCCGCCgagGCGAACgUCGuuguaGAGCUg -3' miRNA: 3'- aCUgCGGCGGg--CGCUUGgAGC-----UUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 49365 | 0.67 | 0.508406 |
Target: 5'- cGACGUCGCCCGacucuACCcgcUCGAuGCg -3' miRNA: 3'- aCUGCGGCGGGCgcu--UGG---AGCUuCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 34990 | 0.66 | 0.580752 |
Target: 5'- --uCGCCGCCUGCGugUCagCGAucAGCUg -3' miRNA: 3'- acuGCGGCGGGCGCuuGGa-GCU--UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 7325 | 0.66 | 0.539023 |
Target: 5'- --uCGCUGCUCGaGGACUUCGAucGCCc -3' miRNA: 3'- acuGCGGCGGGCgCUUGGAGCUu-CGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 7889 | 0.67 | 0.518534 |
Target: 5'- cGAaGCUGCUCGCGA---UCGggGCUc -3' miRNA: 3'- aCUgCGGCGGGCGCUuggAGCuuCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 8072 | 0.66 | 0.54937 |
Target: 5'- aGAUGUCGCCCGgGuucuuGCCguUCGGguGGCa -3' miRNA: 3'- aCUGCGGCGGGCgCu----UGG--AGCU--UCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 9452 | 0.66 | 0.555609 |
Target: 5'- gGACGCCGUagucggcggcaUCGUGuuugucccaggucACCUCGuAGCCa -3' miRNA: 3'- aCUGCGGCG-----------GGCGCu------------UGGAGCuUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 55350 | 0.66 | 0.570242 |
Target: 5'- cGACgaGCgGCCCGuCGAcgaguuCCUCGAGGgUg -3' miRNA: 3'- aCUG--CGgCGGGC-GCUu-----GGAGCUUCgG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 2218 | 0.66 | 0.574441 |
Target: 5'- aUGuccuCGCCGCUCGCuucggccagcgcggaGAucuCCUCGGucuuGCCg -3' miRNA: 3'- -ACu---GCGGCGGGCG---------------CUu--GGAGCUu---CGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 48575 | 0.68 | 0.440137 |
Target: 5'- gUGA-GCCGCCCucGCcGACCUCGuaguGCUg -3' miRNA: 3'- -ACUgCGGCGGG--CGcUUGGAGCuu--CGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 57828 | 0.68 | 0.467816 |
Target: 5'- uUGACGUCGgCCGUc-AUCUCGAguuccucGGCCg -3' miRNA: 3'- -ACUGCGGCgGGCGcuUGGAGCU-------UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 41262 | 0.67 | 0.478548 |
Target: 5'- cGACGUCGCCgGCGAucguCCccaucagUGAAccGCCg -3' miRNA: 3'- aCUGCGGCGGgCGCUu---GGa------GCUU--CGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 47945 | 0.67 | 0.488408 |
Target: 5'- cGAgGCCGUCCGUcaggccguccugGAucGCCUCGcGGGCUu -3' miRNA: 3'- aCUgCGGCGGGCG------------CU--UGGAGC-UUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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