miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 15014 0.67 0.478548
Target:  5'- -uGCGCUgcgGCUCGuCGAGCgUCGAcGGCCa -3'
miRNA:   3'- acUGCGG---CGGGC-GCUUGgAGCU-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 12981 0.66 0.543154
Target:  5'- cGGCGUCagacauccccaucaCCCGUGAACgagUCGAGGCCc -3'
miRNA:   3'- aCUGCGGc-------------GGGCGCUUGg--AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 22837 0.66 0.580752
Target:  5'- cGA-GCCGCCgagGCGAACgUCGuuguaGAGCUg -3'
miRNA:   3'- aCUgCGGCGGg--CGCUUGgAGC-----UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 28992 0.67 0.478548
Target:  5'- cGACGUCGgccugaugaCCGCGAugCa-GGAGCCc -3'
miRNA:   3'- aCUGCGGCg--------GGCGCUugGagCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 34990 0.66 0.580752
Target:  5'- --uCGCCGCCUGCGugUCagCGAucAGCUg -3'
miRNA:   3'- acuGCGGCGGGCGCuuGGa-GCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 52760 0.7 0.349973
Target:  5'- cGACGguggcuuucuggauCCGCUCGCcAGCCUCGAGuGCUu -3'
miRNA:   3'- aCUGC--------------GGCGGGCGcUUGGAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 2218 0.66 0.574441
Target:  5'- aUGuccuCGCCGCUCGCuucggccagcgcggaGAucuCCUCGGucuuGCCg -3'
miRNA:   3'- -ACu---GCGGCGGGCG---------------CUu--GGAGCUu---CGG- -5'
16302 5' -58.8 NC_004084.1 + 7024 0.7 0.352406
Target:  5'- cGGCGUCGgCCGCc-AUCUCGuuGCCg -3'
miRNA:   3'- aCUGCGGCgGGCGcuUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 30231 0.69 0.368932
Target:  5'- aGGCGauGUCCGCGGcgACgUCGAacaGGCCg -3'
miRNA:   3'- aCUGCggCGGGCGCU--UGgAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 13912 0.69 0.402652
Target:  5'- gGGCGaCCGCuUCGCGGAacuCCUCGucaucguuuaggcGAGCCu -3'
miRNA:   3'- aCUGC-GGCG-GGCGCUU---GGAGC-------------UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 23590 0.69 0.41251
Target:  5'- cGACGUCGUgcuccgCCGgGAACugcgCUCGAAGCg -3'
miRNA:   3'- aCUGCGGCG------GGCgCUUG----GAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 48575 0.68 0.440137
Target:  5'- gUGA-GCCGCCCucGCcGACCUCGuaguGCUg -3'
miRNA:   3'- -ACUgCGGCGGG--CGcUUGGAGCuu--CGG- -5'
16302 5' -58.8 NC_004084.1 + 57828 0.68 0.467816
Target:  5'- uUGACGUCGgCCGUc-AUCUCGAguuccucGGCCg -3'
miRNA:   3'- -ACUGCGGCgGGCGcuUGGAGCU-------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 2104 0.67 0.487417
Target:  5'- aGGCGCUgggacauGCCCuCGAugcaguCCUCGAAGUa -3'
miRNA:   3'- aCUGCGG-------CGGGcGCUu-----GGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 49365 0.67 0.508406
Target:  5'- cGACGUCGCCCGacucuACCcgcUCGAuGCg -3'
miRNA:   3'- aCUGCGGCGGGCgcu--UGG---AGCUuCGg -5'
16302 5' -58.8 NC_004084.1 + 50957 0.67 0.518534
Target:  5'- cGuCGCCGCUCGagucgccguCGGACUcCGAGGUCu -3'
miRNA:   3'- aCuGCGGCGGGC---------GCUUGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 17571 0.66 0.539023
Target:  5'- cGACgGCCaGUUCGgGGACCUCGAccuCCg -3'
miRNA:   3'- aCUG-CGG-CGGGCgCUUGGAGCUuc-GG- -5'
16302 5' -58.8 NC_004084.1 + 8072 0.66 0.54937
Target:  5'- aGAUGUCGCCCGgGuucuuGCCguUCGGguGGCa -3'
miRNA:   3'- aCUGCGGCGGGCgCu----UGG--AGCU--UCGg -5'
16302 5' -58.8 NC_004084.1 + 9452 0.66 0.555609
Target:  5'- gGACGCCGUagucggcggcaUCGUGuuugucccaggucACCUCGuAGCCa -3'
miRNA:   3'- aCUGCGGCG-----------GGCGCu------------UGGAGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 55350 0.66 0.570242
Target:  5'- cGACgaGCgGCCCGuCGAcgaguuCCUCGAGGgUg -3'
miRNA:   3'- aCUG--CGgCGGGC-GCUu-----GGAGCUUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.