miRNA display CGI


Results 61 - 80 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 31508 0.68 0.456252
Target:  5'- aGuCGCCGCCuccacuauCGCGAuggaugccgcgaucGCCUCGGAGg- -3'
miRNA:   3'- aCuGCGGCGG--------GCGCU--------------UGGAGCUUCgg -5'
16302 5' -58.8 NC_004084.1 + 20618 0.69 0.41251
Target:  5'- cGACu---CCCGCGAACCUCGuAGCa -3'
miRNA:   3'- aCUGcggcGGGCGCUUGGAGCuUCGg -5'
16302 5' -58.8 NC_004084.1 + 10535 0.66 0.570242
Target:  5'- cGACGuuGCCgagccaGCGGACgaguagCUCGggGUg -3'
miRNA:   3'- aCUGCggCGGg-----CGCUUG------GAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 53662 0.66 0.54937
Target:  5'- cGGCGuUCGCCC-CG-AUCUCGAucAGCUg -3'
miRNA:   3'- aCUGC-GGCGGGcGCuUGGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 28846 0.66 0.54937
Target:  5'- cGACGCCcaCCCgGCGAuggcCCUCaacGGCCu -3'
miRNA:   3'- aCUGCGGc-GGG-CGCUu---GGAGcu-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 17571 0.66 0.539023
Target:  5'- cGACgGCCaGUUCGgGGACCUCGAccuCCg -3'
miRNA:   3'- aCUG-CGG-CGGGCgCUUGGAGCUuc-GG- -5'
16302 5' -58.8 NC_004084.1 + 24312 0.67 0.518534
Target:  5'- gGGCGUuaauuCGCCCGCacguGCCUucaCGAGGCg -3'
miRNA:   3'- aCUGCG-----GCGGGCGcu--UGGA---GCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 10837 0.67 0.508406
Target:  5'- aGuCGCCaccgcGCUCGCGAAcguCCUCGAacGGCg -3'
miRNA:   3'- aCuGCGG-----CGGGCGCUU---GGAGCU--UCGg -5'
16302 5' -58.8 NC_004084.1 + 41262 0.67 0.478548
Target:  5'- cGACGUCGCCgGCGAucguCCccaucagUGAAccGCCg -3'
miRNA:   3'- aCUGCGGCGGgCGCUu---GGa------GCUU--CGG- -5'
16302 5' -58.8 NC_004084.1 + 29350 0.68 0.468787
Target:  5'- cGACGCC-CCCgaGCGGGCggUCGcGGCCu -3'
miRNA:   3'- aCUGCGGcGGG--CGCUUGg-AGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 29479 0.74 0.190212
Target:  5'- cGACGCUGUCgaCGCGcuCCcCGAGGCCg -3'
miRNA:   3'- aCUGCGGCGG--GCGCuuGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 50192 0.73 0.221919
Target:  5'- cGACGUCGCCCucuGC-AACCgugaUGAAGCCg -3'
miRNA:   3'- aCUGCGGCGGG---CGcUUGGa---GCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 31643 0.69 0.403542
Target:  5'- cGACGuuGCgugggggaugauCCGCGAcCuCUCGAuGGCCg -3'
miRNA:   3'- aCUGCggCG------------GGCGCUuG-GAGCU-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 9719 0.69 0.385981
Target:  5'- cGACGCCgauGCCgGCG-GCUUCGAGGaUCu -3'
miRNA:   3'- aCUGCGG---CGGgCGCuUGGAGCUUC-GG- -5'
16302 5' -58.8 NC_004084.1 + 7024 0.7 0.352406
Target:  5'- cGGCGUCGgCCGCc-AUCUCGuuGCCg -3'
miRNA:   3'- aCUGCGGCgGGCGcuUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 52760 0.7 0.349973
Target:  5'- cGACGguggcuuucuggauCCGCUCGCcAGCCUCGAGuGCUu -3'
miRNA:   3'- aCUGC--------------GGCGGGCGcUUGGAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 29182 0.7 0.328615
Target:  5'- gGGCGCgacgaguacuCGCCCGCGAACaacgUCGAcGCg -3'
miRNA:   3'- aCUGCG----------GCGGGCGCUUGg---AGCUuCGg -5'
16302 5' -58.8 NC_004084.1 + 28007 0.71 0.306033
Target:  5'- cGuCGCCGCCCGUcGACgUCGGcuCCa -3'
miRNA:   3'- aCuGCGGCGGGCGcUUGgAGCUucGG- -5'
16302 5' -58.8 NC_004084.1 + 33325 0.72 0.262527
Target:  5'- cUGcCGCCGCCgCGUGAaggaugcagcugagGCCUCGGAccucaaccGCCg -3'
miRNA:   3'- -ACuGCGGCGG-GCGCU--------------UGGAGCUU--------CGG- -5'
16302 5' -58.8 NC_004084.1 + 2350 0.72 0.245478
Target:  5'- aGuCGUCGuUCCGCGucguCCUCGAAGUCg -3'
miRNA:   3'- aCuGCGGC-GGGCGCuu--GGAGCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.