miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16303 3' -54.2 NC_004084.1 + 217 0.69 0.671725
Target:  5'- aCGGCCAUcGGCGgGG-GAGU-CGUCg -3'
miRNA:   3'- -GCCGGUAcCUGCgCCaUUCAuGCAGg -5'
16303 3' -54.2 NC_004084.1 + 1188 0.66 0.805596
Target:  5'- gCGGUCGUGGACGUagucGcGUAAGcggucgaaGUCCu -3'
miRNA:   3'- -GCCGGUACCUGCG----C-CAUUCaug-----CAGG- -5'
16303 3' -54.2 NC_004084.1 + 6255 0.66 0.833072
Target:  5'- gCGGuUCGUcGACGUGGUcg--GCGUCCa -3'
miRNA:   3'- -GCC-GGUAcCUGCGCCAuucaUGCAGG- -5'
16303 3' -54.2 NC_004084.1 + 6459 0.66 0.814946
Target:  5'- -cGCCGUGGA-GCGGg----AUGUCCu -3'
miRNA:   3'- gcCGGUACCUgCGCCauucaUGCAGG- -5'
16303 3' -54.2 NC_004084.1 + 6876 0.77 0.235356
Target:  5'- cCGGUCGUGGAUGCcg-AGGUACGUCg -3'
miRNA:   3'- -GCCGGUACCUGCGccaUUCAUGCAGg -5'
16303 3' -54.2 NC_004084.1 + 9690 0.74 0.36721
Target:  5'- uGGCCcgccGGAgacCGCGGUGAGUugG-CCg -3'
miRNA:   3'- gCCGGua--CCU---GCGCCAUUCAugCaGG- -5'
16303 3' -54.2 NC_004084.1 + 10241 0.67 0.746113
Target:  5'- aGGUCGccUGGugaguCGCGGUcg--GCGUCCg -3'
miRNA:   3'- gCCGGU--ACCu----GCGCCAuucaUGCAGG- -5'
16303 3' -54.2 NC_004084.1 + 12156 0.66 0.805596
Target:  5'- -aGCgAUGGAUGUcgcacacgaGGUcgcaGGGUACGUCCc -3'
miRNA:   3'- gcCGgUACCUGCG---------CCA----UUCAUGCAGG- -5'
16303 3' -54.2 NC_004084.1 + 17959 0.66 0.805596
Target:  5'- aGGCCguGUGGACGUcGUcGGUGuCGcCCu -3'
miRNA:   3'- gCCGG--UACCUGCGcCAuUCAU-GCaGG- -5'
16303 3' -54.2 NC_004084.1 + 22472 0.66 0.783429
Target:  5'- aCGGCUgcGUGGugGCGGcuccAGUucgggacguaguccACGUCg -3'
miRNA:   3'- -GCCGG--UACCugCGCCau--UCA--------------UGCAGg -5'
16303 3' -54.2 NC_004084.1 + 23445 0.72 0.449866
Target:  5'- gCGGCgAUGGAaGCGGUcAGUAuCGcCCg -3'
miRNA:   3'- -GCCGgUACCUgCGCCAuUCAU-GCaGG- -5'
16303 3' -54.2 NC_004084.1 + 23600 0.82 0.126872
Target:  5'- -cGCgAUGGACGCGGUGAGcACGUCg -3'
miRNA:   3'- gcCGgUACCUGCGCCAUUCaUGCAGg -5'
16303 3' -54.2 NC_004084.1 + 23630 0.7 0.584662
Target:  5'- -cGCaAUGGACGCGGUGAGcgAC-UCCc -3'
miRNA:   3'- gcCGgUACCUGCGCCAUUCa-UGcAGG- -5'
16303 3' -54.2 NC_004084.1 + 23658 0.79 0.176059
Target:  5'- aCGGCaAUGGACGCGGUGAGcgAC-UCCc -3'
miRNA:   3'- -GCCGgUACCUGCGCCAUUCa-UGcAGG- -5'
16303 3' -54.2 NC_004084.1 + 23688 0.82 0.126872
Target:  5'- aCGGCaAUGGACGCGGUGA--GCGUCUc -3'
miRNA:   3'- -GCCGgUACCUGCGCCAUUcaUGCAGG- -5'
16303 3' -54.2 NC_004084.1 + 23718 0.83 0.098679
Target:  5'- aCGGCgAUGGACGCGGUGAGcgAC-UCCc -3'
miRNA:   3'- -GCCGgUACCUGCGCCAUUCa-UGcAGG- -5'
16303 3' -54.2 NC_004084.1 + 23748 0.79 0.176059
Target:  5'- aCGGCaAUGGACGCGGUGAGcgAC-UCCc -3'
miRNA:   3'- -GCCGgUACCUGCGCCAUUCa-UGcAGG- -5'
16303 3' -54.2 NC_004084.1 + 23778 0.79 0.176059
Target:  5'- aCGGCaAUGGACGCGGUGAGcgAC-UCCc -3'
miRNA:   3'- -GCCGgUACCUGCGCCAUUCa-UGcAGG- -5'
16303 3' -54.2 NC_004084.1 + 23808 0.82 0.126872
Target:  5'- aCGGCaAUGGACGCGGUGA--GCGUCUc -3'
miRNA:   3'- -GCCGgUACCUGCGCCAUUcaUGCAGG- -5'
16303 3' -54.2 NC_004084.1 + 23870 0.66 0.805596
Target:  5'- -cGCgAUGGACGCGGUGAucGCuUCa -3'
miRNA:   3'- gcCGgUACCUGCGCCAUUcaUGcAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.