miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16303 5' -53.8 NC_004084.1 + 114 0.66 0.794842
Target:  5'- gGUGGAUGUGGacgGAGgagaccuCGUCCGcAGAg -3'
miRNA:   3'- -UACCUGCGCCa--UUCau-----GCAGGC-UCUg -5'
16303 5' -53.8 NC_004084.1 + 23873 0.66 0.794842
Target:  5'- gAUGGACGCGGUGAucGC-UUC-AGACg -3'
miRNA:   3'- -UACCUGCGCCAUUcaUGcAGGcUCUG- -5'
16303 5' -53.8 NC_004084.1 + 22479 0.67 0.75434
Target:  5'- cGUGGugGCGGcucca--GUUCGGGACg -3'
miRNA:   3'- -UACCugCGCCauucaugCAGGCUCUG- -5'
16303 5' -53.8 NC_004084.1 + 23995 0.67 0.733281
Target:  5'- gAUGGAUGCGGUuGGggGC-UCCcAGACg -3'
miRNA:   3'- -UACCUGCGCCAuUCa-UGcAGGcUCUG- -5'
16303 5' -53.8 NC_004084.1 + 41064 0.67 0.72259
Target:  5'- --aGAaGCGGUccgcGAGUACGUCgaCGAGACg -3'
miRNA:   3'- uacCUgCGCCA----UUCAUGCAG--GCUCUG- -5'
16303 5' -53.8 NC_004084.1 + 27341 0.68 0.690017
Target:  5'- -gGGACGCGGUGGGccggacgACGUCUcAGcGCa -3'
miRNA:   3'- uaCCUGCGCCAUUCa------UGCAGGcUC-UG- -5'
16303 5' -53.8 NC_004084.1 + 25045 0.68 0.653608
Target:  5'- -cGGAgCGCGuGUGGGUagacucggcgguugAgGUCCGAGGCc -3'
miRNA:   3'- uaCCU-GCGC-CAUUCA--------------UgCAGGCUCUG- -5'
16303 5' -53.8 NC_004084.1 + 51221 0.69 0.634741
Target:  5'- cUGGGCGUGGUGcGUcgagcagcucgACGUCCG-GAUc -3'
miRNA:   3'- uACCUGCGCCAUuCA-----------UGCAGGCuCUG- -5'
16303 5' -53.8 NC_004084.1 + 24025 0.7 0.590406
Target:  5'- gAUGGACGCGGU---UGCGggcUCCcAGACg -3'
miRNA:   3'- -UACCUGCGCCAuucAUGC---AGGcUCUG- -5'
16303 5' -53.8 NC_004084.1 + 39609 0.7 0.590406
Target:  5'- cUGGACGUGGccGGcgACGUCCucGACg -3'
miRNA:   3'- uACCUGCGCCauUCa-UGCAGGcuCUG- -5'
16303 5' -53.8 NC_004084.1 + 9698 0.7 0.557496
Target:  5'- -cGGAgacCGCGGUGAGUugG-CCGAcGCc -3'
miRNA:   3'- uaCCU---GCGCCAUUCAugCaGGCUcUG- -5'
16303 5' -53.8 NC_004084.1 + 24055 0.7 0.546637
Target:  5'- gAUGGACGCGGUugcgGCGUCCa---- -3'
miRNA:   3'- -UACCUGCGCCAuucaUGCAGGcucug -5'
16303 5' -53.8 NC_004084.1 + 23693 0.76 0.28803
Target:  5'- aAUGGACGCGGUGA--GCGUCUcccAGACg -3'
miRNA:   3'- -UACCUGCGCCAUUcaUGCAGGc--UCUG- -5'
16303 5' -53.8 NC_004084.1 + 23813 0.76 0.27162
Target:  5'- aAUGGACGCGGUGA--GCGUCUccaccgucgcgaugGAGGCa -3'
miRNA:   3'- -UACCUGCGCCAUUcaUGCAGG--------------CUCUG- -5'
16303 5' -53.8 NC_004084.1 + 23783 0.77 0.240435
Target:  5'- aAUGGACGCGGUGAGcgAC-UCCcAGACg -3'
miRNA:   3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5'
16303 5' -53.8 NC_004084.1 + 23753 0.77 0.240435
Target:  5'- aAUGGACGCGGUGAGcgAC-UCCcAGACg -3'
miRNA:   3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5'
16303 5' -53.8 NC_004084.1 + 23663 0.77 0.240435
Target:  5'- aAUGGACGCGGUGAGcgAC-UCCcAGACg -3'
miRNA:   3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5'
16303 5' -53.8 NC_004084.1 + 23633 0.77 0.240435
Target:  5'- aAUGGACGCGGUGAGcgAC-UCCcAGACg -3'
miRNA:   3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5'
16303 5' -53.8 NC_004084.1 + 23723 0.77 0.234198
Target:  5'- gAUGGACGCGGUGAGcgAC-UCCcAGACg -3'
miRNA:   3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5'
16303 5' -53.8 NC_004084.1 + 31886 0.77 0.234198
Target:  5'- cAUGGACGCGGUAAGUGCcUCCa---- -3'
miRNA:   3'- -UACCUGCGCCAUUCAUGcAGGcucug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.