Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16303 | 5' | -53.8 | NC_004084.1 | + | 51221 | 0.69 | 0.634741 |
Target: 5'- cUGGGCGUGGUGcGUcgagcagcucgACGUCCG-GAUc -3' miRNA: 3'- uACCUGCGCCAUuCA-----------UGCAGGCuCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 25045 | 0.68 | 0.653608 |
Target: 5'- -cGGAgCGCGuGUGGGUagacucggcgguugAgGUCCGAGGCc -3' miRNA: 3'- uaCCU-GCGC-CAUUCA--------------UgCAGGCUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 27341 | 0.68 | 0.690017 |
Target: 5'- -gGGACGCGGUGGGccggacgACGUCUcAGcGCa -3' miRNA: 3'- uaCCUGCGCCAUUCa------UGCAGGcUC-UG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 41064 | 0.67 | 0.72259 |
Target: 5'- --aGAaGCGGUccgcGAGUACGUCgaCGAGACg -3' miRNA: 3'- uacCUgCGCCA----UUCAUGCAG--GCUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23995 | 0.67 | 0.733281 |
Target: 5'- gAUGGAUGCGGUuGGggGC-UCCcAGACg -3' miRNA: 3'- -UACCUGCGCCAuUCa-UGcAGGcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 22479 | 0.67 | 0.75434 |
Target: 5'- cGUGGugGCGGcucca--GUUCGGGACg -3' miRNA: 3'- -UACCugCGCCauucaugCAGGCUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 114 | 0.66 | 0.794842 |
Target: 5'- gGUGGAUGUGGacgGAGgagaccuCGUCCGcAGAg -3' miRNA: 3'- -UACCUGCGCCa--UUCau-----GCAGGC-UCUg -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23873 | 0.66 | 0.794842 |
Target: 5'- gAUGGACGCGGUGAucGC-UUC-AGACg -3' miRNA: 3'- -UACCUGCGCCAUUcaUGcAGGcUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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