Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16303 | 5' | -53.8 | NC_004084.1 | + | 23965 | 0.97 | 0.010188 |
Target: 5'- gAUGGACGCGGUAAGUACGUCCGAaACa -3' miRNA: 3'- -UACCUGCGCCAUUCAUGCAGGCUcUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23873 | 0.66 | 0.794842 |
Target: 5'- gAUGGACGCGGUGAucGC-UUC-AGACg -3' miRNA: 3'- -UACCUGCGCCAUUcaUGcAGGcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23995 | 0.67 | 0.733281 |
Target: 5'- gAUGGAUGCGGUuGGggGC-UCCcAGACg -3' miRNA: 3'- -UACCUGCGCCAuUCa-UGcAGGcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 41064 | 0.67 | 0.72259 |
Target: 5'- --aGAaGCGGUccgcGAGUACGUCgaCGAGACg -3' miRNA: 3'- uacCUgCGCCA----UUCAUGCAG--GCUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 25045 | 0.68 | 0.653608 |
Target: 5'- -cGGAgCGCGuGUGGGUagacucggcgguugAgGUCCGAGGCc -3' miRNA: 3'- uaCCU-GCGC-CAUUCA--------------UgCAGGCUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 51221 | 0.69 | 0.634741 |
Target: 5'- cUGGGCGUGGUGcGUcgagcagcucgACGUCCG-GAUc -3' miRNA: 3'- uACCUGCGCCAUuCA-----------UGCAGGCuCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 24025 | 0.7 | 0.590406 |
Target: 5'- gAUGGACGCGGU---UGCGggcUCCcAGACg -3' miRNA: 3'- -UACCUGCGCCAuucAUGC---AGGcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 39609 | 0.7 | 0.590406 |
Target: 5'- cUGGACGUGGccGGcgACGUCCucGACg -3' miRNA: 3'- uACCUGCGCCauUCa-UGCAGGcuCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 24055 | 0.7 | 0.546637 |
Target: 5'- gAUGGACGCGGUugcgGCGUCCa---- -3' miRNA: 3'- -UACCUGCGCCAuucaUGCAGGcucug -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23693 | 0.76 | 0.28803 |
Target: 5'- aAUGGACGCGGUGA--GCGUCUcccAGACg -3' miRNA: 3'- -UACCUGCGCCAUUcaUGCAGGc--UCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23813 | 0.76 | 0.27162 |
Target: 5'- aAUGGACGCGGUGA--GCGUCUccaccgucgcgaugGAGGCa -3' miRNA: 3'- -UACCUGCGCCAUUcaUGCAGG--------------CUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23936 | 0.84 | 0.086073 |
Target: 5'- gAUGGACGCGGUAAGUA-GUCCGAcACc -3' miRNA: 3'- -UACCUGCGCCAUUCAUgCAGGCUcUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23603 | 0.8 | 0.156049 |
Target: 5'- gAUGGACGCGGUGAGcACGUCgcAGACc -3' miRNA: 3'- -UACCUGCGCCAUUCaUGCAGgcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23723 | 0.77 | 0.234198 |
Target: 5'- gAUGGACGCGGUGAGcgAC-UCCcAGACg -3' miRNA: 3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23633 | 0.77 | 0.240435 |
Target: 5'- aAUGGACGCGGUGAGcgAC-UCCcAGACg -3' miRNA: 3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23663 | 0.77 | 0.240435 |
Target: 5'- aAUGGACGCGGUGAGcgAC-UCCcAGACg -3' miRNA: 3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23753 | 0.77 | 0.240435 |
Target: 5'- aAUGGACGCGGUGAGcgAC-UCCcAGACg -3' miRNA: 3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 23783 | 0.77 | 0.240435 |
Target: 5'- aAUGGACGCGGUGAGcgAC-UCCcAGACg -3' miRNA: 3'- -UACCUGCGCCAUUCa-UGcAGGcUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 31766 | 1.09 | 0.001574 |
Target: 5'- gAUGGACGCGGUAAGUACGUCCGAGACg -3' miRNA: 3'- -UACCUGCGCCAUUCAUGCAGGCUCUG- -5' |
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16303 | 5' | -53.8 | NC_004084.1 | + | 22479 | 0.67 | 0.75434 |
Target: 5'- cGUGGugGCGGcucca--GUUCGGGACg -3' miRNA: 3'- -UACCugCGCCauucaugCAGGCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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