miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16304 5' -62.4 NC_004084.1 + 14178 0.66 0.366646
Target:  5'- cGUCCCGuCGuagacgagcucCCAGCCGUCGGccauccgcucGUCGAg -3'
miRNA:   3'- uUAGGGC-GC-----------GGUCGGCAGCCa---------CGGCU- -5'
16304 5' -62.4 NC_004084.1 + 39310 0.66 0.358432
Target:  5'- gAGUCCaCaCGgUAGCCGccgCGGUGCUGAu -3'
miRNA:   3'- -UUAGG-GcGCgGUCGGCa--GCCACGGCU- -5'
16304 5' -62.4 NC_004084.1 + 35357 0.66 0.353566
Target:  5'- cGUUUCGUGCCucaacgacgccacuGCCGUCaGUGUCGAa -3'
miRNA:   3'- uUAGGGCGCGGu-------------CGGCAGcCACGGCU- -5'
16304 5' -62.4 NC_004084.1 + 39447 0.66 0.350348
Target:  5'- -uUCCC-CGCCGGCCGacuggcgCGaGcGCCGAu -3'
miRNA:   3'- uuAGGGcGCGGUCGGCa------GC-CaCGGCU- -5'
16304 5' -62.4 NC_004084.1 + 3870 0.66 0.342394
Target:  5'- --gCCCucggugauacaGCGCCGgacgaucucGCCGUCcaGGUGCCGGu -3'
miRNA:   3'- uuaGGG-----------CGCGGU---------CGGCAG--CCACGGCU- -5'
16304 5' -62.4 NC_004084.1 + 50374 0.66 0.342394
Target:  5'- aGGUCCCaCGCUAccguuGCCuucUCGGUGCUGAu -3'
miRNA:   3'- -UUAGGGcGCGGU-----CGGc--AGCCACGGCU- -5'
16304 5' -62.4 NC_004084.1 + 44918 0.67 0.326879
Target:  5'- --aCCCGCGCCuAGCUGa-GGUGaCGAu -3'
miRNA:   3'- uuaGGGCGCGG-UCGGCagCCACgGCU- -5'
16304 5' -62.4 NC_004084.1 + 956 0.67 0.297433
Target:  5'- aGGUCgCGgGCCAucucGCgGUCGGUGUCGc -3'
miRNA:   3'- -UUAGgGCgCGGU----CGgCAGCCACGGCu -5'
16304 5' -62.4 NC_004084.1 + 48568 0.67 0.2904
Target:  5'- -cUCCCGCGUgAGCCGcCcucGCCGAc -3'
miRNA:   3'- uuAGGGCGCGgUCGGCaGccaCGGCU- -5'
16304 5' -62.4 NC_004084.1 + 31662 0.68 0.285556
Target:  5'- --aUCCGCGaCCucucgauGGCCGUCGGgaaguucgcuguggGCCGAg -3'
miRNA:   3'- uuaGGGCGC-GG-------UCGGCAGCCa-------------CGGCU- -5'
16304 5' -62.4 NC_004084.1 + 56122 0.68 0.283499
Target:  5'- cGUCgUGCGCCGcaguGUCGUCGGcGUCGAc -3'
miRNA:   3'- uUAGgGCGCGGU----CGGCAGCCaCGGCU- -5'
16304 5' -62.4 NC_004084.1 + 50102 0.68 0.272728
Target:  5'- --aUCCGCGCCGacGCCGUCuggacgaagcccaacGGgaUGCCGAg -3'
miRNA:   3'- uuaGGGCGCGGU--CGGCAG---------------CC--ACGGCU- -5'
16304 5' -62.4 NC_004084.1 + 30058 0.7 0.210593
Target:  5'- cGUCgUUGUGCCAGCCGUCGaGgcUGCCGc -3'
miRNA:   3'- uUAG-GGCGCGGUCGGCAGC-C--ACGGCu -5'
16304 5' -62.4 NC_004084.1 + 27822 0.71 0.175966
Target:  5'- aGAUCCCGCGCCAccucaccCCGcucCGGUucGCCGAc -3'
miRNA:   3'- -UUAGGGCGCGGUc------GGCa--GCCA--CGGCU- -5'
16304 5' -62.4 NC_004084.1 + 14849 0.71 0.16661
Target:  5'- --aUCCGCGCCucgucgggaugacGGCCGccggucUCGGUGCCGu -3'
miRNA:   3'- uuaGGGCGCGG-------------UCGGC------AGCCACGGCu -5'
16304 5' -62.4 NC_004084.1 + 43129 0.72 0.138943
Target:  5'- cAUCaCCGuCGCCAGCCGcCGGauauUGCCGc -3'
miRNA:   3'- uUAG-GGC-GCGGUCGGCaGCC----ACGGCu -5'
16304 5' -62.4 NC_004084.1 + 29926 0.72 0.131747
Target:  5'- --gCCCGCGCCAGCCcguGUUGGcuccgUGCCa- -3'
miRNA:   3'- uuaGGGCGCGGUCGG---CAGCC-----ACGGcu -5'
16304 5' -62.4 NC_004084.1 + 31052 1.06 0.000367
Target:  5'- gAAUCCCGCGCCAGCCGUCGGUGCCGAu -3'
miRNA:   3'- -UUAGGGCGCGGUCGGCAGCCACGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.