Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16304 | 5' | -62.4 | NC_004084.1 | + | 956 | 0.67 | 0.297433 |
Target: 5'- aGGUCgCGgGCCAucucGCgGUCGGUGUCGc -3' miRNA: 3'- -UUAGgGCgCGGU----CGgCAGCCACGGCu -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 3870 | 0.66 | 0.342394 |
Target: 5'- --gCCCucggugauacaGCGCCGgacgaucucGCCGUCcaGGUGCCGGu -3' miRNA: 3'- uuaGGG-----------CGCGGU---------CGGCAG--CCACGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 14178 | 0.66 | 0.366646 |
Target: 5'- cGUCCCGuCGuagacgagcucCCAGCCGUCGGccauccgcucGUCGAg -3' miRNA: 3'- uUAGGGC-GC-----------GGUCGGCAGCCa---------CGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 14849 | 0.71 | 0.16661 |
Target: 5'- --aUCCGCGCCucgucgggaugacGGCCGccggucUCGGUGCCGu -3' miRNA: 3'- uuaGGGCGCGG-------------UCGGC------AGCCACGGCu -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 27822 | 0.71 | 0.175966 |
Target: 5'- aGAUCCCGCGCCAccucaccCCGcucCGGUucGCCGAc -3' miRNA: 3'- -UUAGGGCGCGGUc------GGCa--GCCA--CGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 29926 | 0.72 | 0.131747 |
Target: 5'- --gCCCGCGCCAGCCcguGUUGGcuccgUGCCa- -3' miRNA: 3'- uuaGGGCGCGGUCGG---CAGCC-----ACGGcu -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 30058 | 0.7 | 0.210593 |
Target: 5'- cGUCgUUGUGCCAGCCGUCGaGgcUGCCGc -3' miRNA: 3'- uUAG-GGCGCGGUCGGCAGC-C--ACGGCu -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 31052 | 1.06 | 0.000367 |
Target: 5'- gAAUCCCGCGCCAGCCGUCGGUGCCGAu -3' miRNA: 3'- -UUAGGGCGCGGUCGGCAGCCACGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 31662 | 0.68 | 0.285556 |
Target: 5'- --aUCCGCGaCCucucgauGGCCGUCGGgaaguucgcuguggGCCGAg -3' miRNA: 3'- uuaGGGCGC-GG-------UCGGCAGCCa-------------CGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 35357 | 0.66 | 0.353566 |
Target: 5'- cGUUUCGUGCCucaacgacgccacuGCCGUCaGUGUCGAa -3' miRNA: 3'- uUAGGGCGCGGu-------------CGGCAGcCACGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 39310 | 0.66 | 0.358432 |
Target: 5'- gAGUCCaCaCGgUAGCCGccgCGGUGCUGAu -3' miRNA: 3'- -UUAGG-GcGCgGUCGGCa--GCCACGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 39447 | 0.66 | 0.350348 |
Target: 5'- -uUCCC-CGCCGGCCGacuggcgCGaGcGCCGAu -3' miRNA: 3'- uuAGGGcGCGGUCGGCa------GC-CaCGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 43129 | 0.72 | 0.138943 |
Target: 5'- cAUCaCCGuCGCCAGCCGcCGGauauUGCCGc -3' miRNA: 3'- uUAG-GGC-GCGGUCGGCaGCC----ACGGCu -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 44918 | 0.67 | 0.326879 |
Target: 5'- --aCCCGCGCCuAGCUGa-GGUGaCGAu -3' miRNA: 3'- uuaGGGCGCGG-UCGGCagCCACgGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 48568 | 0.67 | 0.2904 |
Target: 5'- -cUCCCGCGUgAGCCGcCcucGCCGAc -3' miRNA: 3'- uuAGGGCGCGgUCGGCaGccaCGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 50102 | 0.68 | 0.272728 |
Target: 5'- --aUCCGCGCCGacGCCGUCuggacgaagcccaacGGgaUGCCGAg -3' miRNA: 3'- uuaGGGCGCGGU--CGGCAG---------------CC--ACGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 50374 | 0.66 | 0.342394 |
Target: 5'- aGGUCCCaCGCUAccguuGCCuucUCGGUGCUGAu -3' miRNA: 3'- -UUAGGGcGCGGU-----CGGc--AGCCACGGCU- -5' |
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16304 | 5' | -62.4 | NC_004084.1 | + | 56122 | 0.68 | 0.283499 |
Target: 5'- cGUCgUGCGCCGcaguGUCGUCGGcGUCGAc -3' miRNA: 3'- uUAGgGCGCGGU----CGGCAGCCaCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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