miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16305 3' -58.3 NC_004084.1 + 95 0.68 0.473068
Target:  5'- ---uGCUugUUGCCGUCUCGAUgGUGg -3'
miRNA:   3'- cgagUGAugAGCGGCGGGGCUAgCGC- -5'
16305 3' -58.3 NC_004084.1 + 2421 0.67 0.502832
Target:  5'- gGCUCGCcagcgaUGCUCGCCaucggcgaucaGCCCCuccgcGUCGCc -3'
miRNA:   3'- -CGAGUG------AUGAGCGG-----------CGGGGc----UAGCGc -5'
16305 3' -58.3 NC_004084.1 + 7096 0.72 0.267023
Target:  5'- cGCgggCGC-ACUCGaUCGCCUCGGUCGCc -3'
miRNA:   3'- -CGa--GUGaUGAGC-GGCGGGGCUAGCGc -5'
16305 3' -58.3 NC_004084.1 + 7252 0.66 0.585629
Target:  5'- --gCGCgUGCUCGgcgaCCGUCUCGAUCGCc -3'
miRNA:   3'- cgaGUG-AUGAGC----GGCGGGGCUAGCGc -5'
16305 3' -58.3 NC_004084.1 + 7323 0.69 0.416381
Target:  5'- uCUCGCUGCUCGagGaCUUCGAUCGCc -3'
miRNA:   3'- cGAGUGAUGAGCggC-GGGGCUAGCGc -5'
16305 3' -58.3 NC_004084.1 + 10482 0.72 0.294457
Target:  5'- cGUaCACcGCUCGCCauuGCCCUgGAUCGCGc -3'
miRNA:   3'- -CGaGUGaUGAGCGG---CGGGG-CUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 10756 0.66 0.564571
Target:  5'- gGCUCGCcaguggggGCgUCGCCGaCCUCGA-CGCc -3'
miRNA:   3'- -CGAGUGa-------UG-AGCGGC-GGGGCUaGCGc -5'
16305 3' -58.3 NC_004084.1 + 12423 0.68 0.444217
Target:  5'- --cCGuCUuCUCGCCGUCCaUGAUCGCGu -3'
miRNA:   3'- cgaGU-GAuGAGCGGCGGG-GCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 16675 0.66 0.575078
Target:  5'- -gUCGCcgg-CGUCGUCCCGAUCGUc -3'
miRNA:   3'- cgAGUGaugaGCGGCGGGGCUAGCGc -5'
16305 3' -58.3 NC_004084.1 + 16733 0.67 0.523121
Target:  5'- cGCUCGCcggucUGCaUCGCgGCCUCGAugacguuguUCGCc -3'
miRNA:   3'- -CGAGUG-----AUG-AGCGgCGGGGCU---------AGCGc -5'
16305 3' -58.3 NC_004084.1 + 16950 0.73 0.254099
Target:  5'- uCUCGCccgcACUCGCCGgccacugcaagaCCUCGAUCGCGu -3'
miRNA:   3'- cGAGUGa---UGAGCGGC------------GGGGCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 17842 0.66 0.596217
Target:  5'- aGUUCGauggugacCUCGUCGCCCgcauCGAUCGCu -3'
miRNA:   3'- -CGAGUgau-----GAGCGGCGGG----GCUAGCGc -5'
16305 3' -58.3 NC_004084.1 + 19357 0.66 0.617469
Target:  5'- aGCgacCUGCugaUCGacaaCGUCCCGAUCGCa -3'
miRNA:   3'- -CGaguGAUG---AGCg---GCGGGGCUAGCGc -5'
16305 3' -58.3 NC_004084.1 + 21471 0.68 0.444217
Target:  5'- gGCUCGCc-CUCGagggcggcgaUCGCCUCGGUUGCGu -3'
miRNA:   3'- -CGAGUGauGAGC----------GGCGGGGCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 26082 0.66 0.611085
Target:  5'- uGCUCguGCUcUUCGCCugcGCugggaucaggacguuCCCGGUCGCGa -3'
miRNA:   3'- -CGAG--UGAuGAGCGG---CG---------------GGGCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 27261 0.67 0.502832
Target:  5'- cGCUCgACgagauCUCGCgGUCCgaaccgcugaCGAUCGCGg -3'
miRNA:   3'- -CGAG-UGau---GAGCGgCGGG----------GCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 29232 0.66 0.595156
Target:  5'- uGUUCGCgggcgagUACUCGUCGCgCCCGGcUCGa- -3'
miRNA:   3'- -CGAGUG-------AUGAGCGGCG-GGGCU-AGCgc -5'
16305 3' -58.3 NC_004084.1 + 29507 0.73 0.254099
Target:  5'- aGCUUGggGCUCcaGCCaGCCUCGAUCGCGc -3'
miRNA:   3'- -CGAGUgaUGAG--CGG-CGGGGCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 29655 0.7 0.372445
Target:  5'- cGCUgCugUACUCGCgccgguaGCUCCGGggguUCGCGa -3'
miRNA:   3'- -CGA-GugAUGAGCGg------CGGGGCU----AGCGC- -5'
16305 3' -58.3 NC_004084.1 + 29759 0.69 0.434821
Target:  5'- aGCUCGCUGCggcgguagGUCGUCCCc-UCGCGg -3'
miRNA:   3'- -CGAGUGAUGag------CGGCGGGGcuAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.