miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16305 3' -58.3 NC_004084.1 + 95 0.68 0.473068
Target:  5'- ---uGCUugUUGCCGUCUCGAUgGUGg -3'
miRNA:   3'- cgagUGAugAGCGGCGGGGCUAgCGC- -5'
16305 3' -58.3 NC_004084.1 + 42695 0.68 0.472091
Target:  5'- cGCUCACgaacgACgaccagacggcgaUCaCCGUCaCCGAUCGCGa -3'
miRNA:   3'- -CGAGUGa----UG-------------AGcGGCGG-GGCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 21471 0.68 0.444217
Target:  5'- gGCUCGCc-CUCGagggcggcgaUCGCCUCGGUUGCGu -3'
miRNA:   3'- -CGAGUGauGAGC----------GGCGGGGCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 12423 0.68 0.444217
Target:  5'- --cCGuCUuCUCGCCGUCCaUGAUCGCGu -3'
miRNA:   3'- cgaGU-GAuGAGCGGCGGG-GCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 29759 0.69 0.434821
Target:  5'- aGCUCGCUGCggcgguagGUCGUCCCc-UCGCGg -3'
miRNA:   3'- -CGAGUGAUGag------CGGCGGGGcuAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 44243 0.69 0.434821
Target:  5'- gGCUCACUcGCUUGUCgaGCCUCGAUacCGUGu -3'
miRNA:   3'- -CGAGUGA-UGAGCGG--CGGGGCUA--GCGC- -5'
16305 3' -58.3 NC_004084.1 + 7323 0.69 0.416381
Target:  5'- uCUCGCUGCUCGagGaCUUCGAUCGCc -3'
miRNA:   3'- cGAGUGAUGAGCggC-GGGGCUAGCGc -5'
16305 3' -58.3 NC_004084.1 + 29655 0.7 0.372445
Target:  5'- cGCUgCugUACUCGCgccgguaGCUCCGGggguUCGCGa -3'
miRNA:   3'- -CGA-GugAUGAGCGg------CGGGGCU----AGCGC- -5'
16305 3' -58.3 NC_004084.1 + 55971 0.7 0.359066
Target:  5'- gGCUCGgauCUCGucgacggucgauucaCCGCCCaCGAUCGCGu -3'
miRNA:   3'- -CGAGUgauGAGC---------------GGCGGG-GCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 46491 0.71 0.308977
Target:  5'- cCUCGCUGgUCGCgaCGUCgCCGGUCGCc -3'
miRNA:   3'- cGAGUGAUgAGCG--GCGG-GGCUAGCGc -5'
16305 3' -58.3 NC_004084.1 + 10482 0.72 0.294457
Target:  5'- cGUaCACcGCUCGCCauuGCCCUgGAUCGCGc -3'
miRNA:   3'- -CGaGUGaUGAGCGG---CGGGG-CUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 7096 0.72 0.267023
Target:  5'- cGCgggCGC-ACUCGaUCGCCUCGGUCGCc -3'
miRNA:   3'- -CGa--GUGaUGAGC-GGCGGGGCUAGCGc -5'
16305 3' -58.3 NC_004084.1 + 16950 0.73 0.254099
Target:  5'- uCUCGCccgcACUCGCCGgccacugcaagaCCUCGAUCGCGu -3'
miRNA:   3'- cGAGUGa---UGAGCGGC------------GGGGCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 29507 0.73 0.254099
Target:  5'- aGCUUGggGCUCcaGCCaGCCUCGAUCGCGc -3'
miRNA:   3'- -CGAGUgaUGAG--CGG-CGGGGCUAGCGC- -5'
16305 3' -58.3 NC_004084.1 + 54916 0.86 0.027696
Target:  5'- cGCUCguACUGCUCGCCGUCUCGAUCGgGa -3'
miRNA:   3'- -CGAG--UGAUGAGCGGCGGGGCUAGCgC- -5'
16305 3' -58.3 NC_004084.1 + 30115 1.1 0.000487
Target:  5'- uGCUCACUACUCGCCGCCCCGAUCGCGa -3'
miRNA:   3'- -CGAGUGAUGAGCGGCGGGGCUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.