miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16306 3' -51.5 NC_004084.1 + 15595 0.66 0.921438
Target:  5'- --cUCACU-CGuCAUCGGaauCACCGGCGu -3'
miRNA:   3'- cuaAGUGAuGUuGUGGCU---GUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 7619 0.66 0.921438
Target:  5'- ----gACUACGACGgCGAaGCUGGCa -3'
miRNA:   3'- cuaagUGAUGUUGUgGCUgUGGCCGc -5'
16306 3' -51.5 NC_004084.1 + 43766 0.66 0.915196
Target:  5'- --cUCGCg--GGCAUCGACugggcgcucGCCGGCGg -3'
miRNA:   3'- cuaAGUGaugUUGUGGCUG---------UGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 48500 0.66 0.908667
Target:  5'- --cUCACU-CuuUAgCGGCAUCGGCGg -3'
miRNA:   3'- cuaAGUGAuGuuGUgGCUGUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 18135 0.66 0.908667
Target:  5'- gGAUggACUGgAACGaCGuCGCCGGCGa -3'
miRNA:   3'- -CUAagUGAUgUUGUgGCuGUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 40061 0.66 0.901856
Target:  5'- --aUCACUACcACucauCCGGCGgCUGGCc -3'
miRNA:   3'- cuaAGUGAUGuUGu---GGCUGU-GGCCGc -5'
16306 3' -51.5 NC_004084.1 + 5370 0.66 0.901856
Target:  5'- cGUUUACUGCgGACGCCGugccaGCCGGa- -3'
miRNA:   3'- cUAAGUGAUG-UUGUGGCug---UGGCCgc -5'
16306 3' -51.5 NC_004084.1 + 7262 0.66 0.894763
Target:  5'- ----gACgagaGCGACACCGACACCGa-- -3'
miRNA:   3'- cuaagUGa---UGUUGUGGCUGUGGCcgc -5'
16306 3' -51.5 NC_004084.1 + 49324 0.66 0.894763
Target:  5'- --cUCGCUACuc--UCGAUAUCGGCGa -3'
miRNA:   3'- cuaAGUGAUGuuguGGCUGUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 56579 0.66 0.894763
Target:  5'- ---gCGCUGCAggagccACACCGugAacgCGGCGu -3'
miRNA:   3'- cuaaGUGAUGU------UGUGGCugUg--GCCGC- -5'
16306 3' -51.5 NC_004084.1 + 10648 0.66 0.892581
Target:  5'- gGAUUCug-ACAGCGCCGAgugccguuugcgauCGCCGGgCa -3'
miRNA:   3'- -CUAAGugaUGUUGUGGCU--------------GUGGCC-Gc -5'
16306 3' -51.5 NC_004084.1 + 51771 0.66 0.887395
Target:  5'- -----uCUACGGC-CUGACACCGGUc -3'
miRNA:   3'- cuaaguGAUGUUGuGGCUGUGGCCGc -5'
16306 3' -51.5 NC_004084.1 + 52584 0.66 0.887395
Target:  5'- ----gACUGCGGCGgCGugGuCCGGUGg -3'
miRNA:   3'- cuaagUGAUGUUGUgGCugU-GGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 22523 0.66 0.887395
Target:  5'- ---cCACUcCAGCgggacguccgACCGGCACUGGCc -3'
miRNA:   3'- cuaaGUGAuGUUG----------UGGCUGUGGCCGc -5'
16306 3' -51.5 NC_004084.1 + 7582 0.66 0.887395
Target:  5'- -uUUUGCUACAAggcagguugUGCCGGCGCCcGCGa -3'
miRNA:   3'- cuAAGUGAUGUU---------GUGGCUGUGGcCGC- -5'
16306 3' -51.5 NC_004084.1 + 7225 0.66 0.886643
Target:  5'- ---cCGCgcCAGCGCCGACcucgacgAUCGGCGc -3'
miRNA:   3'- cuaaGUGauGUUGUGGCUG-------UGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 7424 0.67 0.879755
Target:  5'- ----gACgaggGCGAUGCCGACGgUGGCGa -3'
miRNA:   3'- cuaagUGa---UGUUGUGGCUGUgGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 27356 0.67 0.879755
Target:  5'- uGGUcCAU--CGGCACCGACGgCUGGCGc -3'
miRNA:   3'- -CUAaGUGauGUUGUGGCUGU-GGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 57001 0.67 0.871851
Target:  5'- ----gACgGCGACGCCGAgaauggcgaCGCCGGUGa -3'
miRNA:   3'- cuaagUGaUGUUGUGGCU---------GUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 41197 0.67 0.863688
Target:  5'- ----aAC-ACGACGCCcgcGACGCUGGCGa -3'
miRNA:   3'- cuaagUGaUGUUGUGG---CUGUGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.