Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 5370 | 0.66 | 0.901856 |
Target: 5'- cGUUUACUGCgGACGCCGugccaGCCGGa- -3' miRNA: 3'- cUAAGUGAUG-UUGUGGCug---UGGCCgc -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 51771 | 0.66 | 0.887395 |
Target: 5'- -----uCUACGGC-CUGACACCGGUc -3' miRNA: 3'- cuaaguGAUGUUGuGGCUGUGGCCGc -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 52584 | 0.66 | 0.887395 |
Target: 5'- ----gACUGCGGCGgCGugGuCCGGUGg -3' miRNA: 3'- cuaagUGAUGUUGUgGCugU-GGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 7262 | 0.66 | 0.894763 |
Target: 5'- ----gACgagaGCGACACCGACACCGa-- -3' miRNA: 3'- cuaagUGa---UGUUGUGGCUGUGGCcgc -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 18135 | 0.66 | 0.908667 |
Target: 5'- gGAUggACUGgAACGaCGuCGCCGGCGa -3' miRNA: 3'- -CUAagUGAUgUUGUgGCuGUGGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 48500 | 0.66 | 0.908667 |
Target: 5'- --cUCACU-CuuUAgCGGCAUCGGCGg -3' miRNA: 3'- cuaAGUGAuGuuGUgGCUGUGGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 43766 | 0.66 | 0.915196 |
Target: 5'- --cUCGCg--GGCAUCGACugggcgcucGCCGGCGg -3' miRNA: 3'- cuaAGUGaugUUGUGGCUG---------UGGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 7619 | 0.66 | 0.921438 |
Target: 5'- ----gACUACGACGgCGAaGCUGGCa -3' miRNA: 3'- cuaagUGAUGUUGUgGCUgUGGCCGc -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 40061 | 0.66 | 0.901856 |
Target: 5'- --aUCACUACcACucauCCGGCGgCUGGCc -3' miRNA: 3'- cuaAGUGAUGuUGu---GGCUGU-GGCCGc -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 15595 | 0.66 | 0.921438 |
Target: 5'- --cUCACU-CGuCAUCGGaauCACCGGCGu -3' miRNA: 3'- cuaAGUGAuGUuGUGGCU---GUGGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 7225 | 0.66 | 0.886643 |
Target: 5'- ---cCGCgcCAGCGCCGACcucgacgAUCGGCGc -3' miRNA: 3'- cuaaGUGauGUUGUGGCUG-------UGGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 49324 | 0.66 | 0.894763 |
Target: 5'- --cUCGCUACuc--UCGAUAUCGGCGa -3' miRNA: 3'- cuaAGUGAUGuuguGGCUGUGGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 56579 | 0.66 | 0.894763 |
Target: 5'- ---gCGCUGCAggagccACACCGugAacgCGGCGu -3' miRNA: 3'- cuaaGUGAUGU------UGUGGCugUg--GCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 7582 | 0.66 | 0.887395 |
Target: 5'- -uUUUGCUACAAggcagguugUGCCGGCGCCcGCGa -3' miRNA: 3'- cuAAGUGAUGUU---------GUGGCUGUGGcCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 10648 | 0.66 | 0.892581 |
Target: 5'- gGAUUCug-ACAGCGCCGAgugccguuugcgauCGCCGGgCa -3' miRNA: 3'- -CUAAGugaUGUUGUGGCU--------------GUGGCC-Gc -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 22523 | 0.66 | 0.887395 |
Target: 5'- ---cCACUcCAGCgggacguccgACCGGCACUGGCc -3' miRNA: 3'- cuaaGUGAuGUUG----------UGGCUGUGGCCGc -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 57001 | 0.67 | 0.871851 |
Target: 5'- ----gACgGCGACGCCGAgaauggcgaCGCCGGUGa -3' miRNA: 3'- cuaagUGaUGUUGUGGCU---------GUGGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 41197 | 0.67 | 0.863688 |
Target: 5'- ----aAC-ACGACGCCcgcGACGCUGGCGa -3' miRNA: 3'- cuaagUGaUGUUGUGG---CUGUGGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 27356 | 0.67 | 0.879755 |
Target: 5'- uGGUcCAU--CGGCACCGACGgCUGGCGc -3' miRNA: 3'- -CUAaGUGauGUUGUGGCUGU-GGCCGC- -5' |
|||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 7424 | 0.67 | 0.879755 |
Target: 5'- ----gACgaggGCGAUGCCGACGgUGGCGa -3' miRNA: 3'- cuaagUGa---UGUUGUGGCUGUgGCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home