miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16306 3' -51.5 NC_004084.1 + 11849 0.67 0.855274
Target:  5'- --aUCGCcGCGAUGCCGAUGCCGaGUc -3'
miRNA:   3'- cuaAGUGaUGUUGUGGCUGUGGC-CGc -5'
16306 3' -51.5 NC_004084.1 + 54099 0.68 0.837725
Target:  5'- ---aCGCUccggacucgACGACGCCcgcGAuCACCGGCGg -3'
miRNA:   3'- cuaaGUGA---------UGUUGUGG---CU-GUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 29214 0.68 0.837725
Target:  5'- cGAcgCGCUcuGgAACAUCGACGCCGaGCa -3'
miRNA:   3'- -CUaaGUGA--UgUUGUGGCUGUGGC-CGc -5'
16306 3' -51.5 NC_004084.1 + 58019 0.68 0.837725
Target:  5'- --aUCGacgACGuCugCGACAUCGGCGg -3'
miRNA:   3'- cuaAGUga-UGUuGugGCUGUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 9083 0.68 0.828609
Target:  5'- --aUCGCcGCGguACGCCGAC-CgGGCGa -3'
miRNA:   3'- cuaAGUGaUGU--UGUGGCUGuGgCCGC- -5'
16306 3' -51.5 NC_004084.1 + 17145 0.68 0.817386
Target:  5'- cGGUUCACUGauggggaCGAuCGCCGGCGa -3'
miRNA:   3'- -CUAAGUGAUguugug-GCU-GUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 40121 0.68 0.809741
Target:  5'- --gUC-CUACGAgGCCGACGgUGGCc -3'
miRNA:   3'- cuaAGuGAUGUUgUGGCUGUgGCCGc -5'
16306 3' -51.5 NC_004084.1 + 27018 0.68 0.800011
Target:  5'- --cUCcuCUACGACACCGGCcuucGCCGGg- -3'
miRNA:   3'- cuaAGu-GAUGUUGUGGCUG----UGGCCgc -5'
16306 3' -51.5 NC_004084.1 + 54555 0.69 0.790099
Target:  5'- cGUUCGCggggUugGACACCGAgGuuCCGGUGg -3'
miRNA:   3'- cUAAGUG----AugUUGUGGCUgU--GGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 31394 0.69 0.790099
Target:  5'- ----gGCggACuACGCCGAUAUCGGCGa -3'
miRNA:   3'- cuaagUGa-UGuUGUGGCUGUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 32144 0.69 0.780015
Target:  5'- --cUCGCgaGCGGCACCaucuggGACACgGGCGa -3'
miRNA:   3'- cuaAGUGa-UGUUGUGG------CUGUGgCCGC- -5'
16306 3' -51.5 NC_004084.1 + 42486 0.69 0.748855
Target:  5'- uGAUUCGCUugAGCAUacaucgaGAUcagACCGGCu -3'
miRNA:   3'- -CUAAGUGAugUUGUGg------CUG---UGGCCGc -5'
16306 3' -51.5 NC_004084.1 + 22468 0.69 0.748855
Target:  5'- --gUCACgGC--CGCCGACcCCGGCGa -3'
miRNA:   3'- cuaAGUGaUGuuGUGGCUGuGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 39237 0.73 0.527867
Target:  5'- --gUCGuCUACGACAUCGGCAagggCGGCGg -3'
miRNA:   3'- cuaAGU-GAUGUUGUGGCUGUg---GCCGC- -5'
16306 3' -51.5 NC_004084.1 + 26396 0.74 0.506414
Target:  5'- ---aCGCgACGGCAUCGAUAUCGGCGu -3'
miRNA:   3'- cuaaGUGaUGUUGUGGCUGUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 27008 0.75 0.424841
Target:  5'- cGcgUCGuCUGCGACuucGCCGAUAUCGGCGu -3'
miRNA:   3'- -CuaAGU-GAUGUUG---UGGCUGUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 9712 0.76 0.387097
Target:  5'- aGUUgGC--CGACGCCGAUGCCGGCGg -3'
miRNA:   3'- cUAAgUGauGUUGUGGCUGUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 43538 0.78 0.310628
Target:  5'- ---gCGCUgacgaagcACGGCACCGAgACCGGCGg -3'
miRNA:   3'- cuaaGUGA--------UGUUGUGGCUgUGGCCGC- -5'
16306 3' -51.5 NC_004084.1 + 29909 1.09 0.002729
Target:  5'- aGAUUCACUACAACACCGACACCGGCGu -3'
miRNA:   3'- -CUAAGUGAUGUUGUGGCUGUGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.