Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 43538 | 0.78 | 0.310628 |
Target: 5'- ---gCGCUgacgaagcACGGCACCGAgACCGGCGg -3' miRNA: 3'- cuaaGUGA--------UGUUGUGGCUgUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 27356 | 0.67 | 0.879755 |
Target: 5'- uGGUcCAU--CGGCACCGACGgCUGGCGc -3' miRNA: 3'- -CUAaGUGauGUUGUGGCUGU-GGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 51771 | 0.66 | 0.887395 |
Target: 5'- -----uCUACGGC-CUGACACCGGUc -3' miRNA: 3'- cuaaguGAUGUUGuGGCUGUGGCCGc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 52584 | 0.66 | 0.887395 |
Target: 5'- ----gACUGCGGCGgCGugGuCCGGUGg -3' miRNA: 3'- cuaagUGAUGUUGUgGCugU-GGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 7262 | 0.66 | 0.894763 |
Target: 5'- ----gACgagaGCGACACCGACACCGa-- -3' miRNA: 3'- cuaagUGa---UGUUGUGGCUGUGGCcgc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 18135 | 0.66 | 0.908667 |
Target: 5'- gGAUggACUGgAACGaCGuCGCCGGCGa -3' miRNA: 3'- -CUAagUGAUgUUGUgGCuGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 48500 | 0.66 | 0.908667 |
Target: 5'- --cUCACU-CuuUAgCGGCAUCGGCGg -3' miRNA: 3'- cuaAGUGAuGuuGUgGCUGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 43766 | 0.66 | 0.915196 |
Target: 5'- --cUCGCg--GGCAUCGACugggcgcucGCCGGCGg -3' miRNA: 3'- cuaAGUGaugUUGUGGCUG---------UGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 7619 | 0.66 | 0.921438 |
Target: 5'- ----gACUACGACGgCGAaGCUGGCa -3' miRNA: 3'- cuaagUGAUGUUGUgGCUgUGGCCGc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 7424 | 0.67 | 0.879755 |
Target: 5'- ----gACgaggGCGAUGCCGACGgUGGCGa -3' miRNA: 3'- cuaagUGa---UGUUGUGGCUGUgGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 57001 | 0.67 | 0.871851 |
Target: 5'- ----gACgGCGACGCCGAgaauggcgaCGCCGGUGa -3' miRNA: 3'- cuaagUGaUGUUGUGGCU---------GUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 27008 | 0.75 | 0.424841 |
Target: 5'- cGcgUCGuCUGCGACuucGCCGAUAUCGGCGu -3' miRNA: 3'- -CuaAGU-GAUGUUG---UGGCUGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 26396 | 0.74 | 0.506414 |
Target: 5'- ---aCGCgACGGCAUCGAUAUCGGCGu -3' miRNA: 3'- cuaaGUGaUGUUGUGGCUGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 39237 | 0.73 | 0.527867 |
Target: 5'- --gUCGuCUACGACAUCGGCAagggCGGCGg -3' miRNA: 3'- cuaAGU-GAUGUUGUGGCUGUg---GCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 22468 | 0.69 | 0.748855 |
Target: 5'- --gUCACgGC--CGCCGACcCCGGCGa -3' miRNA: 3'- cuaAGUGaUGuuGUGGCUGuGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 40121 | 0.68 | 0.809741 |
Target: 5'- --gUC-CUACGAgGCCGACGgUGGCc -3' miRNA: 3'- cuaAGuGAUGUUgUGGCUGUgGCCGc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 17145 | 0.68 | 0.817386 |
Target: 5'- cGGUUCACUGauggggaCGAuCGCCGGCGa -3' miRNA: 3'- -CUAAGUGAUguugug-GCU-GUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 58019 | 0.68 | 0.837725 |
Target: 5'- --aUCGacgACGuCugCGACAUCGGCGg -3' miRNA: 3'- cuaAGUga-UGUuGugGCUGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 41197 | 0.67 | 0.863688 |
Target: 5'- ----aAC-ACGACGCCcgcGACGCUGGCGa -3' miRNA: 3'- cuaagUGaUGUUGUGG---CUGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 29909 | 1.09 | 0.002729 |
Target: 5'- aGAUUCACUACAACACCGACACCGGCGu -3' miRNA: 3'- -CUAAGUGAUGUUGUGGCUGUGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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