Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16306 | 3' | -51.5 | NC_004084.1 | + | 5370 | 0.66 | 0.901856 |
Target: 5'- cGUUUACUGCgGACGCCGugccaGCCGGa- -3' miRNA: 3'- cUAAGUGAUG-UUGUGGCug---UGGCCgc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 32144 | 0.69 | 0.780015 |
Target: 5'- --cUCGCgaGCGGCACCaucuggGACACgGGCGa -3' miRNA: 3'- cuaAGUGa-UGUUGUGG------CUGUGgCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 42486 | 0.69 | 0.748855 |
Target: 5'- uGAUUCGCUugAGCAUacaucgaGAUcagACCGGCu -3' miRNA: 3'- -CUAAGUGAugUUGUGg------CUG---UGGCCGc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 29909 | 1.09 | 0.002729 |
Target: 5'- aGAUUCACUACAACACCGACACCGGCGu -3' miRNA: 3'- -CUAAGUGAUGUUGUGGCUGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 22523 | 0.66 | 0.887395 |
Target: 5'- ---cCACUcCAGCgggacguccgACCGGCACUGGCc -3' miRNA: 3'- cuaaGUGAuGUUG----------UGGCUGUGGCCGc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 7582 | 0.66 | 0.887395 |
Target: 5'- -uUUUGCUACAAggcagguugUGCCGGCGCCcGCGa -3' miRNA: 3'- cuAAGUGAUGUU---------GUGGCUGUGGcCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 11849 | 0.67 | 0.855274 |
Target: 5'- --aUCGCcGCGAUGCCGAUGCCGaGUc -3' miRNA: 3'- cuaAGUGaUGUUGUGGCUGUGGC-CGc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 54099 | 0.68 | 0.837725 |
Target: 5'- ---aCGCUccggacucgACGACGCCcgcGAuCACCGGCGg -3' miRNA: 3'- cuaaGUGA---------UGUUGUGG---CU-GUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 40061 | 0.66 | 0.901856 |
Target: 5'- --aUCACUACcACucauCCGGCGgCUGGCc -3' miRNA: 3'- cuaAGUGAUGuUGu---GGCUGU-GGCCGc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 27018 | 0.68 | 0.800011 |
Target: 5'- --cUCcuCUACGACACCGGCcuucGCCGGg- -3' miRNA: 3'- cuaAGu-GAUGUUGUGGCUG----UGGCCgc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 9083 | 0.68 | 0.828609 |
Target: 5'- --aUCGCcGCGguACGCCGAC-CgGGCGa -3' miRNA: 3'- cuaAGUGaUGU--UGUGGCUGuGgCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 49324 | 0.66 | 0.894763 |
Target: 5'- --cUCGCUACuc--UCGAUAUCGGCGa -3' miRNA: 3'- cuaAGUGAUGuuguGGCUGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 54555 | 0.69 | 0.790099 |
Target: 5'- cGUUCGCggggUugGACACCGAgGuuCCGGUGg -3' miRNA: 3'- cUAAGUG----AugUUGUGGCUgU--GGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 56579 | 0.66 | 0.894763 |
Target: 5'- ---gCGCUGCAggagccACACCGugAacgCGGCGu -3' miRNA: 3'- cuaaGUGAUGU------UGUGGCugUg--GCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 29214 | 0.68 | 0.837725 |
Target: 5'- cGAcgCGCUcuGgAACAUCGACGCCGaGCa -3' miRNA: 3'- -CUaaGUGA--UgUUGUGGCUGUGGC-CGc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 31394 | 0.69 | 0.790099 |
Target: 5'- ----gGCggACuACGCCGAUAUCGGCGa -3' miRNA: 3'- cuaagUGa-UGuUGUGGCUGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 9712 | 0.76 | 0.387097 |
Target: 5'- aGUUgGC--CGACGCCGAUGCCGGCGg -3' miRNA: 3'- cUAAgUGauGUUGUGGCUGUGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 10648 | 0.66 | 0.892581 |
Target: 5'- gGAUUCug-ACAGCGCCGAgugccguuugcgauCGCCGGgCa -3' miRNA: 3'- -CUAAGugaUGUUGUGGCU--------------GUGGCC-Gc -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 7225 | 0.66 | 0.886643 |
Target: 5'- ---cCGCgcCAGCGCCGACcucgacgAUCGGCGc -3' miRNA: 3'- cuaaGUGauGUUGUGGCUG-------UGGCCGC- -5' |
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16306 | 3' | -51.5 | NC_004084.1 | + | 15595 | 0.66 | 0.921438 |
Target: 5'- --cUCACU-CGuCAUCGGaauCACCGGCGu -3' miRNA: 3'- cuaAGUGAuGUuGUGGCU---GUGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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