Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16306 | 5' | -49.6 | NC_004084.1 | + | 52271 | 0.66 | 0.970072 |
Target: 5'- aUCGCCAGGAacccCGGCGcuggucgcggaAUCGcaucgaccUGAACGAa -3' miRNA: 3'- gAGUGGUCUU----GCCGC-----------UAGC--------AUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 16503 | 0.66 | 0.970072 |
Target: 5'- aUCGCCAcAGCaGGCGAUCGcgucgccGCGGu -3' miRNA: 3'- gAGUGGUcUUG-CCGCUAGCauu----UGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 29445 | 0.66 | 0.970072 |
Target: 5'- uUCACCGcGAAC-GCGG-CGUGGGCGc -3' miRNA: 3'- gAGUGGU-CUUGcCGCUaGCAUUUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 53488 | 0.66 | 0.970072 |
Target: 5'- gUCAuCCAGuacgucGACGGCGAagUCGUcguGCGGu -3' miRNA: 3'- gAGU-GGUC------UUGCCGCU--AGCAuu-UGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 43786 | 0.66 | 0.970072 |
Target: 5'- gCUCGCCGGcggagaguccGGCGGCGAggagCGccgggAGAUGGa -3' miRNA: 3'- -GAGUGGUC----------UUGCCGCUa---GCa----UUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 28893 | 0.66 | 0.966717 |
Target: 5'- uCUCGCCGcGggUGGCGAagCGggugugcccgaGAGCGAc -3' miRNA: 3'- -GAGUGGU-CuuGCCGCUa-GCa----------UUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 51122 | 0.66 | 0.966717 |
Target: 5'- gCUCGuCCAGGAguacgcuugGGCGAUCccGAACGAg -3' miRNA: 3'- -GAGU-GGUCUUg--------CCGCUAGcaUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 23437 | 0.66 | 0.966717 |
Target: 5'- -aCACgCAG-GCGGCGAUgG-AAGCGGu -3' miRNA: 3'- gaGUG-GUCuUGCCGCUAgCaUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 53078 | 0.66 | 0.966717 |
Target: 5'- cCUCGCCGcccgcuCGGCGA-CGUGAucuuCGAg -3' miRNA: 3'- -GAGUGGUcuu---GCCGCUaGCAUUu---GCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 8164 | 0.66 | 0.963106 |
Target: 5'- cCUCGCCGccAACGGCGA-CGaGGACGc -3' miRNA: 3'- -GAGUGGUc-UUGCCGCUaGCaUUUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 14153 | 0.66 | 0.95923 |
Target: 5'- cCUCGCCgucgucgugaAGGcCGGuCGucccGUCGUAGACGAg -3' miRNA: 3'- -GAGUGG----------UCUuGCC-GC----UAGCAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 44271 | 0.66 | 0.95923 |
Target: 5'- uUCACgAcGACGGCGAggugUCGguaUGAACGAc -3' miRNA: 3'- gAGUGgUcUUGCCGCU----AGC---AUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 36493 | 0.66 | 0.95923 |
Target: 5'- uUCaACCGGGACuacuggGGcCGAUCG-AAACGAg -3' miRNA: 3'- gAG-UGGUCUUG------CC-GCUAGCaUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 982 | 0.66 | 0.95923 |
Target: 5'- -cCACCGGGACGGCcug---AGACGAc -3' miRNA: 3'- gaGUGGUCUUGCCGcuagcaUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 35898 | 0.66 | 0.955083 |
Target: 5'- --gGCCGGA--GGCGAUCGUcguCGAg -3' miRNA: 3'- gagUGGUCUugCCGCUAGCAuuuGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 11842 | 0.66 | 0.955083 |
Target: 5'- aUCGCCuG-ACGGCGAUaucgaGUucACGAc -3' miRNA: 3'- gAGUGGuCuUGCCGCUAg----CAuuUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 35465 | 0.66 | 0.955083 |
Target: 5'- aUCgACCAGGagcaggucgagGCGGCGAUCGc---CGAg -3' miRNA: 3'- gAG-UGGUCU-----------UGCCGCUAGCauuuGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 3625 | 0.66 | 0.954653 |
Target: 5'- gUCAUCGGGACuauggagGGCGAUCaGUAGcgcugGCGGg -3' miRNA: 3'- gAGUGGUCUUG-------CCGCUAG-CAUU-----UGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 10642 | 0.66 | 0.954653 |
Target: 5'- cCUCACC-GAcaucaacGCGGCG-UCGaUGAugGAu -3' miRNA: 3'- -GAGUGGuCU-------UGCCGCuAGC-AUUugCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 13215 | 0.67 | 0.949277 |
Target: 5'- aUCACCgaguacgaggagcaAGAAUGGCcGAUCGaggaGGGCGAa -3' miRNA: 3'- gAGUGG--------------UCUUGCCG-CUAGCa---UUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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