miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16306 5' -49.6 NC_004084.1 + 47749 0.67 0.945953
Target:  5'- gUCGCUGcc-CGGCGAUCGcAAACGGc -3'
miRNA:   3'- gAGUGGUcuuGCCGCUAGCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 23867 0.67 0.940961
Target:  5'- cCUCGCgauGGAcGCGGUGAUCGcuucAGACGAu -3'
miRNA:   3'- -GAGUGg--UCU-UGCCGCUAGCa---UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 38901 0.67 0.935681
Target:  5'- aUCACguGAAUGGCGAUgacucGACGAc -3'
miRNA:   3'- gAGUGguCUUGCCGCUAgcau-UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 37559 0.67 0.935681
Target:  5'- aUCGCCGGcGCGGuCGA-CGUgccacccucggcGAGCGAg -3'
miRNA:   3'- gAGUGGUCuUGCC-GCUaGCA------------UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 399 0.67 0.929537
Target:  5'- cCUCACCgAGAGCGaGCaggagauGAUCGaGAGCGu -3'
miRNA:   3'- -GAGUGG-UCUUGC-CG-------CUAGCaUUUGCu -5'
16306 5' -49.6 NC_004084.1 + 17580 0.68 0.924247
Target:  5'- -gCACCAGAGCaGGCGGUUGaAAAaGGg -3'
miRNA:   3'- gaGUGGUCUUG-CCGCUAGCaUUUgCU- -5'
16306 5' -49.6 NC_004084.1 + 32045 0.68 0.924247
Target:  5'- uCUgACCAG-ACGGCGAuggauUCGguuGCGGc -3'
miRNA:   3'- -GAgUGGUCuUGCCGCU-----AGCauuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 21991 0.68 0.907641
Target:  5'- gUCguaCAGGucuGCGGCGAUCGUcgaaagaccgugaccGAGCGAg -3'
miRNA:   3'- gAGug-GUCU---UGCCGCUAGCA---------------UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 1179 0.68 0.918092
Target:  5'- aUCGCCG--AC-GCGGUCGUGGACGu -3'
miRNA:   3'- gAGUGGUcuUGcCGCUAGCAUUUGCu -5'
16306 5' -49.6 NC_004084.1 + 1454 0.68 0.904223
Target:  5'- uUCGCuCGGAccgcuucgcugauGCGGCGAUCG---ACGAc -3'
miRNA:   3'- gAGUG-GUCU-------------UGCCGCUAGCauuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 278 0.68 0.918092
Target:  5'- --aGCUGGGgcagACGGUGAUCGUGucGCGAa -3'
miRNA:   3'- gagUGGUCU----UGCCGCUAGCAUu-UGCU- -5'
16306 5' -49.6 NC_004084.1 + 56612 0.68 0.897892
Target:  5'- gUCGCCGGu-CGGCGAguucgccggaUCGUggcucaGAACGAc -3'
miRNA:   3'- gAGUGGUCuuGCCGCU----------AGCA------UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 8563 0.69 0.890589
Target:  5'- aCUCGCCGGAucuCGcucGCGA-CGUcGACGAg -3'
miRNA:   3'- -GAGUGGUCUu--GC---CGCUaGCAuUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 35950 0.69 0.875157
Target:  5'- gUCGCCGGGGuCGGCGGcCGUGAcCa- -3'
miRNA:   3'- gAGUGGUCUU-GCCGCUaGCAUUuGcu -5'
16306 5' -49.6 NC_004084.1 + 54530 0.69 0.875157
Target:  5'- -gCACCuGGACGGCGAgaUCGUccGGCGc -3'
miRNA:   3'- gaGUGGuCUUGCCGCU--AGCAu-UUGCu -5'
16306 5' -49.6 NC_004084.1 + 50254 0.69 0.875157
Target:  5'- gUCGCUGGAGCGGgcUGGUCGgc-ACGAc -3'
miRNA:   3'- gAGUGGUCUUGCC--GCUAGCauuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 44950 0.69 0.890589
Target:  5'- gUCgACgAGAACGGCGuUCGUc-GCGAg -3'
miRNA:   3'- gAG-UGgUCUUGCCGCuAGCAuuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 5343 0.69 0.890589
Target:  5'- gUCGCCGagcGGGCGGCGAggacugGGACGAu -3'
miRNA:   3'- gAGUGGU---CUUGCCGCUagca--UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 3160 0.69 0.893544
Target:  5'- -aCGCCGccGAccguagacgucgucgACGGCGAggaCGUGAACGAg -3'
miRNA:   3'- gaGUGGU--CU---------------UGCCGCUa--GCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 16591 0.69 0.883009
Target:  5'- aCUCGUCGGAGCGGCGAcugcugcgcugaUCGgucuGugGAa -3'
miRNA:   3'- -GAGUGGUCUUGCCGCU------------AGCau--UugCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.