Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16306 | 5' | -49.6 | NC_004084.1 | + | 29943 | 1.1 | 0.003924 |
Target: 5'- gCUCACCAGAACGGCGAUCGUAAACGAa -3' miRNA: 3'- -GAGUGGUCUUGCCGCUAGCAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 21472 | 0.77 | 0.452716 |
Target: 5'- gCUCGCCcucgAGGGCGGCGAucgccucgguugcgUCGUAGGCGu -3' miRNA: 3'- -GAGUGG----UCUUGCCGCU--------------AGCAUUUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 51306 | 0.76 | 0.529727 |
Target: 5'- aUCACCAaGACGGCGAcCG-AGGCGAu -3' miRNA: 3'- gAGUGGUcUUGCCGCUaGCaUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 11576 | 0.76 | 0.540674 |
Target: 5'- uUCACgGacGCGGCGAUCGUGGGCa- -3' miRNA: 3'- gAGUGgUcuUGCCGCUAGCAUUUGcu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 31114 | 0.75 | 0.589623 |
Target: 5'- gUCGCCAGGAUGaugaacagcggcgccGCGAUCGUcAGCGGu -3' miRNA: 3'- gAGUGGUCUUGC---------------CGCUAGCAuUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 48185 | 0.75 | 0.573933 |
Target: 5'- aCUCACCAGGcgaccucaaGCGGCGA-CGgguGGCGGa -3' miRNA: 3'- -GAGUGGUCU---------UGCCGCUaGCau-UUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 29579 | 0.75 | 0.562785 |
Target: 5'- aUCGCCGGGugGGCG-UCGUucGCGc -3' miRNA: 3'- gAGUGGUCUugCCGCuAGCAuuUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 1131 | 0.74 | 0.641553 |
Target: 5'- gUC-CUGGAugGcGCGGUUGUAGACGAg -3' miRNA: 3'- gAGuGGUCUugC-CGCUAGCAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 24818 | 0.73 | 0.686583 |
Target: 5'- cCUCAUCcuuaGGGACGGCGAgaUCGUcuucGACGAg -3' miRNA: 3'- -GAGUGG----UCUUGCCGCU--AGCAu---UUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 10881 | 0.72 | 0.752224 |
Target: 5'- aCUgGCCGGAugAUGGCGAUCGU---CGGg -3' miRNA: 3'- -GAgUGGUCU--UGCCGCUAGCAuuuGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 28297 | 0.72 | 0.708814 |
Target: 5'- uCUCGCgauCGGGGCGGCGAguaGUGAGCa- -3' miRNA: 3'- -GAGUG---GUCUUGCCGCUag-CAUUUGcu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 28264 | 0.72 | 0.752224 |
Target: 5'- uUCACCGucGCGGCuucGAcUCGUGGACGGg -3' miRNA: 3'- gAGUGGUcuUGCCG---CU-AGCAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 53236 | 0.72 | 0.719817 |
Target: 5'- gUCAUCuacGAGCgGGCGGUCGUcGACGGc -3' miRNA: 3'- gAGUGGu--CUUG-CCGCUAGCAuUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 39709 | 0.71 | 0.78347 |
Target: 5'- -cCGCCAGuGACGGCGAcgacgcCGUcGACGAg -3' miRNA: 3'- gaGUGGUC-UUGCCGCUa-----GCAuUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 56919 | 0.71 | 0.773205 |
Target: 5'- cCUCGUCGGGACGGCGGacuUCGUAGuCGu -3' miRNA: 3'- -GAGUGGUCUUGCCGCU---AGCAUUuGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 56792 | 0.71 | 0.773205 |
Target: 5'- -cCGCCAGaAGCGGUGAUCGgccaucuuCGAc -3' miRNA: 3'- gaGUGGUC-UUGCCGCUAGCauuu----GCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 23710 | 0.71 | 0.78347 |
Target: 5'- uCUC-CCAG-ACGGCGAUggacgcgGUGAGCGAc -3' miRNA: 3'- -GAGuGGUCuUGCCGCUAg------CAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 18802 | 0.7 | 0.85004 |
Target: 5'- -aCAuCCAGGGCGuGUGGUCGgcGACGc -3' miRNA: 3'- gaGU-GGUCUUGC-CGCUAGCauUUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 31380 | 0.7 | 0.822756 |
Target: 5'- -aCACCAGAGaguucagccCGGCGAaggccggugUCGUAGAgGAg -3' miRNA: 3'- gaGUGGUCUU---------GCCGCU---------AGCAUUUgCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 50060 | 0.7 | 0.813224 |
Target: 5'- cCUCACC-GggUGGCGAUUGcucuCGAa -3' miRNA: 3'- -GAGUGGuCuuGCCGCUAGCauuuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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