miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16306 5' -49.6 NC_004084.1 + 29943 1.1 0.003924
Target:  5'- gCUCACCAGAACGGCGAUCGUAAACGAa -3'
miRNA:   3'- -GAGUGGUCUUGCCGCUAGCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 21472 0.77 0.452716
Target:  5'- gCUCGCCcucgAGGGCGGCGAucgccucgguugcgUCGUAGGCGu -3'
miRNA:   3'- -GAGUGG----UCUUGCCGCU--------------AGCAUUUGCu -5'
16306 5' -49.6 NC_004084.1 + 51306 0.76 0.529727
Target:  5'- aUCACCAaGACGGCGAcCG-AGGCGAu -3'
miRNA:   3'- gAGUGGUcUUGCCGCUaGCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 11576 0.76 0.540674
Target:  5'- uUCACgGacGCGGCGAUCGUGGGCa- -3'
miRNA:   3'- gAGUGgUcuUGCCGCUAGCAUUUGcu -5'
16306 5' -49.6 NC_004084.1 + 29579 0.75 0.562785
Target:  5'- aUCGCCGGGugGGCG-UCGUucGCGc -3'
miRNA:   3'- gAGUGGUCUugCCGCuAGCAuuUGCu -5'
16306 5' -49.6 NC_004084.1 + 48185 0.75 0.573933
Target:  5'- aCUCACCAGGcgaccucaaGCGGCGA-CGgguGGCGGa -3'
miRNA:   3'- -GAGUGGUCU---------UGCCGCUaGCau-UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 31114 0.75 0.589623
Target:  5'- gUCGCCAGGAUGaugaacagcggcgccGCGAUCGUcAGCGGu -3'
miRNA:   3'- gAGUGGUCUUGC---------------CGCUAGCAuUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 1131 0.74 0.641553
Target:  5'- gUC-CUGGAugGcGCGGUUGUAGACGAg -3'
miRNA:   3'- gAGuGGUCUugC-CGCUAGCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 24818 0.73 0.686583
Target:  5'- cCUCAUCcuuaGGGACGGCGAgaUCGUcuucGACGAg -3'
miRNA:   3'- -GAGUGG----UCUUGCCGCU--AGCAu---UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 28297 0.72 0.708814
Target:  5'- uCUCGCgauCGGGGCGGCGAguaGUGAGCa- -3'
miRNA:   3'- -GAGUG---GUCUUGCCGCUag-CAUUUGcu -5'
16306 5' -49.6 NC_004084.1 + 53236 0.72 0.719817
Target:  5'- gUCAUCuacGAGCgGGCGGUCGUcGACGGc -3'
miRNA:   3'- gAGUGGu--CUUG-CCGCUAGCAuUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 28264 0.72 0.752224
Target:  5'- uUCACCGucGCGGCuucGAcUCGUGGACGGg -3'
miRNA:   3'- gAGUGGUcuUGCCG---CU-AGCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 10881 0.72 0.752224
Target:  5'- aCUgGCCGGAugAUGGCGAUCGU---CGGg -3'
miRNA:   3'- -GAgUGGUCU--UGCCGCUAGCAuuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 56919 0.71 0.773205
Target:  5'- cCUCGUCGGGACGGCGGacuUCGUAGuCGu -3'
miRNA:   3'- -GAGUGGUCUUGCCGCU---AGCAUUuGCu -5'
16306 5' -49.6 NC_004084.1 + 56792 0.71 0.773205
Target:  5'- -cCGCCAGaAGCGGUGAUCGgccaucuuCGAc -3'
miRNA:   3'- gaGUGGUC-UUGCCGCUAGCauuu----GCU- -5'
16306 5' -49.6 NC_004084.1 + 39709 0.71 0.78347
Target:  5'- -cCGCCAGuGACGGCGAcgacgcCGUcGACGAg -3'
miRNA:   3'- gaGUGGUC-UUGCCGCUa-----GCAuUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 23710 0.71 0.78347
Target:  5'- uCUC-CCAG-ACGGCGAUggacgcgGUGAGCGAc -3'
miRNA:   3'- -GAGuGGUCuUGCCGCUAg------CAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 50060 0.7 0.813224
Target:  5'- cCUCACC-GggUGGCGAUUGcucuCGAa -3'
miRNA:   3'- -GAGUGGuCuuGCCGCUAGCauuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 49323 0.7 0.822756
Target:  5'- gCUCGCUAcucucGAuauCGGCGAUCGUGu-CGAg -3'
miRNA:   3'- -GAGUGGU-----CUu--GCCGCUAGCAUuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 1013 0.7 0.822756
Target:  5'- gCUCGCCGGcGACGucgacGCGAUCGggGGCGc -3'
miRNA:   3'- -GAGUGGUC-UUGC-----CGCUAGCauUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.