Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16306 | 5' | -49.6 | NC_004084.1 | + | 17580 | 0.68 | 0.924247 |
Target: 5'- -gCACCAGAGCaGGCGGUUGaAAAaGGg -3' miRNA: 3'- gaGUGGUCUUG-CCGCUAGCaUUUgCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 399 | 0.67 | 0.929537 |
Target: 5'- cCUCACCgAGAGCGaGCaggagauGAUCGaGAGCGu -3' miRNA: 3'- -GAGUGG-UCUUGC-CG-------CUAGCaUUUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 38901 | 0.67 | 0.935681 |
Target: 5'- aUCACguGAAUGGCGAUgacucGACGAc -3' miRNA: 3'- gAGUGguCUUGCCGCUAgcau-UUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 37559 | 0.67 | 0.935681 |
Target: 5'- aUCGCCGGcGCGGuCGA-CGUgccacccucggcGAGCGAg -3' miRNA: 3'- gAGUGGUCuUGCC-GCUaGCA------------UUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 23867 | 0.67 | 0.940961 |
Target: 5'- cCUCGCgauGGAcGCGGUGAUCGcuucAGACGAu -3' miRNA: 3'- -GAGUGg--UCU-UGCCGCUAGCa---UUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 47749 | 0.67 | 0.945953 |
Target: 5'- gUCGCUGcc-CGGCGAUCGcAAACGGc -3' miRNA: 3'- gAGUGGUcuuGCCGCUAGCaUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 13215 | 0.67 | 0.949277 |
Target: 5'- aUCACCgaguacgaggagcaAGAAUGGCcGAUCGaggaGGGCGAa -3' miRNA: 3'- gAGUGG--------------UCUUGCCG-CUAGCa---UUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 3625 | 0.66 | 0.954653 |
Target: 5'- gUCAUCGGGACuauggagGGCGAUCaGUAGcgcugGCGGg -3' miRNA: 3'- gAGUGGUCUUG-------CCGCUAG-CAUU-----UGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 10642 | 0.66 | 0.954653 |
Target: 5'- cCUCACC-GAcaucaacGCGGCG-UCGaUGAugGAu -3' miRNA: 3'- -GAGUGGuCU-------UGCCGCuAGC-AUUugCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 35465 | 0.66 | 0.955083 |
Target: 5'- aUCgACCAGGagcaggucgagGCGGCGAUCGc---CGAg -3' miRNA: 3'- gAG-UGGUCU-----------UGCCGCUAGCauuuGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 11842 | 0.66 | 0.955083 |
Target: 5'- aUCGCCuG-ACGGCGAUaucgaGUucACGAc -3' miRNA: 3'- gAGUGGuCuUGCCGCUAg----CAuuUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 35898 | 0.66 | 0.955083 |
Target: 5'- --gGCCGGA--GGCGAUCGUcguCGAg -3' miRNA: 3'- gagUGGUCUugCCGCUAGCAuuuGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 44271 | 0.66 | 0.95923 |
Target: 5'- uUCACgAcGACGGCGAggugUCGguaUGAACGAc -3' miRNA: 3'- gAGUGgUcUUGCCGCU----AGC---AUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 982 | 0.66 | 0.95923 |
Target: 5'- -cCACCGGGACGGCcug---AGACGAc -3' miRNA: 3'- gaGUGGUCUUGCCGcuagcaUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 36493 | 0.66 | 0.95923 |
Target: 5'- uUCaACCGGGACuacuggGGcCGAUCG-AAACGAg -3' miRNA: 3'- gAG-UGGUCUUG------CC-GCUAGCaUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 14153 | 0.66 | 0.95923 |
Target: 5'- cCUCGCCgucgucgugaAGGcCGGuCGucccGUCGUAGACGAg -3' miRNA: 3'- -GAGUGG----------UCUuGCC-GC----UAGCAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 8164 | 0.66 | 0.963106 |
Target: 5'- cCUCGCCGccAACGGCGA-CGaGGACGc -3' miRNA: 3'- -GAGUGGUc-UUGCCGCUaGCaUUUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 53078 | 0.66 | 0.966717 |
Target: 5'- cCUCGCCGcccgcuCGGCGA-CGUGAucuuCGAg -3' miRNA: 3'- -GAGUGGUcuu---GCCGCUaGCAUUu---GCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 28893 | 0.66 | 0.966717 |
Target: 5'- uCUCGCCGcGggUGGCGAagCGggugugcccgaGAGCGAc -3' miRNA: 3'- -GAGUGGU-CuuGCCGCUa-GCa----------UUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 51122 | 0.66 | 0.966717 |
Target: 5'- gCUCGuCCAGGAguacgcuugGGCGAUCccGAACGAg -3' miRNA: 3'- -GAGU-GGUCUUg--------CCGCUAGcaUUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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