Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16306 | 5' | -49.6 | NC_004084.1 | + | 14153 | 0.66 | 0.95923 |
Target: 5'- cCUCGCCgucgucgugaAGGcCGGuCGucccGUCGUAGACGAg -3' miRNA: 3'- -GAGUGG----------UCUuGCC-GC----UAGCAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 16503 | 0.66 | 0.970072 |
Target: 5'- aUCGCCAcAGCaGGCGAUCGcgucgccGCGGu -3' miRNA: 3'- gAGUGGUcUUG-CCGCUAGCauu----UGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 16591 | 0.69 | 0.883009 |
Target: 5'- aCUCGUCGGAGCGGCGAcugcugcgcugaUCGgucuGugGAa -3' miRNA: 3'- -GAGUGGUCUUGCCGCU------------AGCau--UugCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 17580 | 0.68 | 0.924247 |
Target: 5'- -gCACCAGAGCaGGCGGUUGaAAAaGGg -3' miRNA: 3'- gaGUGGUCUUG-CCGCUAGCaUUUgCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 18802 | 0.7 | 0.85004 |
Target: 5'- -aCAuCCAGGGCGuGUGGUCGgcGACGc -3' miRNA: 3'- gaGU-GGUCUUGC-CGCUAGCauUUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 21472 | 0.77 | 0.452716 |
Target: 5'- gCUCGCCcucgAGGGCGGCGAucgccucgguugcgUCGUAGGCGu -3' miRNA: 3'- -GAGUGG----UCUUGCCGCU--------------AGCAUUUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 21991 | 0.68 | 0.907641 |
Target: 5'- gUCguaCAGGucuGCGGCGAUCGUcgaaagaccgugaccGAGCGAg -3' miRNA: 3'- gAGug-GUCU---UGCCGCUAGCA---------------UUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 23437 | 0.66 | 0.966717 |
Target: 5'- -aCACgCAG-GCGGCGAUgG-AAGCGGu -3' miRNA: 3'- gaGUG-GUCuUGCCGCUAgCaUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 23710 | 0.71 | 0.78347 |
Target: 5'- uCUC-CCAG-ACGGCGAUggacgcgGUGAGCGAc -3' miRNA: 3'- -GAGuGGUCuUGCCGCUAg------CAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 23867 | 0.67 | 0.940961 |
Target: 5'- cCUCGCgauGGAcGCGGUGAUCGcuucAGACGAu -3' miRNA: 3'- -GAGUGg--UCU-UGCCGCUAGCa---UUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 24818 | 0.73 | 0.686583 |
Target: 5'- cCUCAUCcuuaGGGACGGCGAgaUCGUcuucGACGAg -3' miRNA: 3'- -GAGUGG----UCUUGCCGCU--AGCAu---UUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 28264 | 0.72 | 0.752224 |
Target: 5'- uUCACCGucGCGGCuucGAcUCGUGGACGGg -3' miRNA: 3'- gAGUGGUcuUGCCG---CU-AGCAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 28297 | 0.72 | 0.708814 |
Target: 5'- uCUCGCgauCGGGGCGGCGAguaGUGAGCa- -3' miRNA: 3'- -GAGUG---GUCUUGCCGCUag-CAUUUGcu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 28893 | 0.66 | 0.966717 |
Target: 5'- uCUCGCCGcGggUGGCGAagCGggugugcccgaGAGCGAc -3' miRNA: 3'- -GAGUGGU-CuuGCCGCUa-GCa----------UUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 29445 | 0.66 | 0.970072 |
Target: 5'- uUCACCGcGAAC-GCGG-CGUGGGCGc -3' miRNA: 3'- gAGUGGU-CUUGcCGCUaGCAUUUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 29579 | 0.75 | 0.562785 |
Target: 5'- aUCGCCGGGugGGCG-UCGUucGCGc -3' miRNA: 3'- gAGUGGUCUugCCGCuAGCAuuUGCu -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 29943 | 1.1 | 0.003924 |
Target: 5'- gCUCACCAGAACGGCGAUCGUAAACGAa -3' miRNA: 3'- -GAGUGGUCUUGCCGCUAGCAUUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 31114 | 0.75 | 0.589623 |
Target: 5'- gUCGCCAGGAUGaugaacagcggcgccGCGAUCGUcAGCGGu -3' miRNA: 3'- gAGUGGUCUUGC---------------CGCUAGCAuUUGCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 31380 | 0.7 | 0.822756 |
Target: 5'- -aCACCAGAGaguucagccCGGCGAaggccggugUCGUAGAgGAg -3' miRNA: 3'- gaGUGGUCUU---------GCCGCU---------AGCAUUUgCU- -5' |
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16306 | 5' | -49.6 | NC_004084.1 | + | 32045 | 0.68 | 0.924247 |
Target: 5'- uCUgACCAG-ACGGCGAuggauUCGguuGCGGc -3' miRNA: 3'- -GAgUGGUCuUGCCGCU-----AGCauuUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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