miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16306 5' -49.6 NC_004084.1 + 32782 0.69 0.86704
Target:  5'- uCUCA--AGAACGGCGAgaUCGUcuucGACGAg -3'
miRNA:   3'- -GAGUggUCUUGCCGCU--AGCAu---UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 35465 0.66 0.955083
Target:  5'- aUCgACCAGGagcaggucgagGCGGCGAUCGc---CGAg -3'
miRNA:   3'- gAG-UGGUCU-----------UGCCGCUAGCauuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 35898 0.66 0.955083
Target:  5'- --gGCCGGA--GGCGAUCGUcguCGAg -3'
miRNA:   3'- gagUGGUCUugCCGCUAGCAuuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 35950 0.69 0.875157
Target:  5'- gUCGCCGGGGuCGGCGGcCGUGAcCa- -3'
miRNA:   3'- gAGUGGUCUU-GCCGCUaGCAUUuGcu -5'
16306 5' -49.6 NC_004084.1 + 36493 0.66 0.95923
Target:  5'- uUCaACCGGGACuacuggGGcCGAUCG-AAACGAg -3'
miRNA:   3'- gAG-UGGUCUUG------CC-GCUAGCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 37559 0.67 0.935681
Target:  5'- aUCGCCGGcGCGGuCGA-CGUgccacccucggcGAGCGAg -3'
miRNA:   3'- gAGUGGUCuUGCC-GCUaGCA------------UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 38901 0.67 0.935681
Target:  5'- aUCACguGAAUGGCGAUgacucGACGAc -3'
miRNA:   3'- gAGUGguCUUGCCGCUAgcau-UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 39709 0.71 0.78347
Target:  5'- -cCGCCAGuGACGGCGAcgacgcCGUcGACGAg -3'
miRNA:   3'- gaGUGGUC-UUGCCGCUa-----GCAuUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 43786 0.66 0.970072
Target:  5'- gCUCGCCGGcggagaguccGGCGGCGAggagCGccgggAGAUGGa -3'
miRNA:   3'- -GAGUGGUC----------UUGCCGCUa---GCa----UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 44271 0.66 0.95923
Target:  5'- uUCACgAcGACGGCGAggugUCGguaUGAACGAc -3'
miRNA:   3'- gAGUGgUcUUGCCGCU----AGC---AUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 44950 0.69 0.890589
Target:  5'- gUCgACgAGAACGGCGuUCGUc-GCGAg -3'
miRNA:   3'- gAG-UGgUCUUGCCGCuAGCAuuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 47749 0.67 0.945953
Target:  5'- gUCGCUGcc-CGGCGAUCGcAAACGGc -3'
miRNA:   3'- gAGUGGUcuuGCCGCUAGCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 48185 0.75 0.573933
Target:  5'- aCUCACCAGGcgaccucaaGCGGCGA-CGgguGGCGGa -3'
miRNA:   3'- -GAGUGGUCU---------UGCCGCUaGCau-UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 49323 0.7 0.822756
Target:  5'- gCUCGCUAcucucGAuauCGGCGAUCGUGu-CGAg -3'
miRNA:   3'- -GAGUGGU-----CUu--GCCGCUAGCAUuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 50060 0.7 0.813224
Target:  5'- cCUCACC-GggUGGCGAUUGcucuCGAa -3'
miRNA:   3'- -GAGUGGuCuuGCCGCUAGCauuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 50254 0.69 0.875157
Target:  5'- gUCGCUGGAGCGGgcUGGUCGgc-ACGAc -3'
miRNA:   3'- gAGUGGUCUUGCC--GCUAGCauuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 51122 0.66 0.966717
Target:  5'- gCUCGuCCAGGAguacgcuugGGCGAUCccGAACGAg -3'
miRNA:   3'- -GAGU-GGUCUUg--------CCGCUAGcaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 51306 0.76 0.529727
Target:  5'- aUCACCAaGACGGCGAcCG-AGGCGAu -3'
miRNA:   3'- gAGUGGUcUUGCCGCUaGCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 52271 0.66 0.970072
Target:  5'- aUCGCCAGGAacccCGGCGcuggucgcggaAUCGcaucgaccUGAACGAa -3'
miRNA:   3'- gAGUGGUCUU----GCCGC-----------UAGC--------AUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 53078 0.66 0.966717
Target:  5'- cCUCGCCGcccgcuCGGCGA-CGUGAucuuCGAg -3'
miRNA:   3'- -GAGUGGUcuu---GCCGCUaGCAUUu---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.