Results 61 - 66 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16306 | 5' | -49.6 | NC_004084.1 | + | 53236 | 0.72 | 0.719817 |
|
Target: 5'- gUCAUCuacGAGCgGGCGGUCGUcGACGGc -3' miRNA: 3'- gAGUGGu--CUUG-CCGCUAGCAuUUGCU- -5' |
|||||||
| 16306 | 5' | -49.6 | NC_004084.1 | + | 53488 | 0.66 | 0.970072 |
|
Target: 5'- gUCAuCCAGuacgucGACGGCGAagUCGUcguGCGGu -3' miRNA: 3'- gAGU-GGUC------UUGCCGCU--AGCAuu-UGCU- -5' |
|||||||
| 16306 | 5' | -49.6 | NC_004084.1 | + | 54530 | 0.69 | 0.875157 |
|
Target: 5'- -gCACCuGGACGGCGAgaUCGUccGGCGc -3' miRNA: 3'- gaGUGGuCUUGCCGCU--AGCAu-UUGCu -5' |
|||||||
| 16306 | 5' | -49.6 | NC_004084.1 | + | 56612 | 0.68 | 0.897892 |
|
Target: 5'- gUCGCCGGu-CGGCGAguucgccggaUCGUggcucaGAACGAc -3' miRNA: 3'- gAGUGGUCuuGCCGCU----------AGCA------UUUGCU- -5' |
|||||||
| 16306 | 5' | -49.6 | NC_004084.1 | + | 56792 | 0.71 | 0.773205 |
|
Target: 5'- -cCGCCAGaAGCGGUGAUCGgccaucuuCGAc -3' miRNA: 3'- gaGUGGUC-UUGCCGCUAGCauuu----GCU- -5' |
|||||||
| 16306 | 5' | -49.6 | NC_004084.1 | + | 56919 | 0.71 | 0.773205 |
|
Target: 5'- cCUCGUCGGGACGGCGGacuUCGUAGuCGu -3' miRNA: 3'- -GAGUGGUCUUGCCGCU---AGCAUUuGCu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home