miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16306 5' -49.6 NC_004084.1 + 28264 0.72 0.752224
Target:  5'- uUCACCGucGCGGCuucGAcUCGUGGACGGg -3'
miRNA:   3'- gAGUGGUcuUGCCG---CU-AGCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 53236 0.72 0.719817
Target:  5'- gUCAUCuacGAGCgGGCGGUCGUcGACGGc -3'
miRNA:   3'- gAGUGGu--CUUG-CCGCUAGCAuUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 28297 0.72 0.708814
Target:  5'- uCUCGCgauCGGGGCGGCGAguaGUGAGCa- -3'
miRNA:   3'- -GAGUG---GUCUUGCCGCUag-CAUUUGcu -5'
16306 5' -49.6 NC_004084.1 + 24818 0.73 0.686583
Target:  5'- cCUCAUCcuuaGGGACGGCGAgaUCGUcuucGACGAg -3'
miRNA:   3'- -GAGUGG----UCUUGCCGCU--AGCAu---UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 48185 0.75 0.573933
Target:  5'- aCUCACCAGGcgaccucaaGCGGCGA-CGgguGGCGGa -3'
miRNA:   3'- -GAGUGGUCU---------UGCCGCUaGCau-UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 29579 0.75 0.562785
Target:  5'- aUCGCCGGGugGGCG-UCGUucGCGc -3'
miRNA:   3'- gAGUGGUCUugCCGCuAGCAuuUGCu -5'
16306 5' -49.6 NC_004084.1 + 11576 0.76 0.540674
Target:  5'- uUCACgGacGCGGCGAUCGUGGGCa- -3'
miRNA:   3'- gAGUGgUcuUGCCGCUAGCAUUUGcu -5'
16306 5' -49.6 NC_004084.1 + 51306 0.76 0.529727
Target:  5'- aUCACCAaGACGGCGAcCG-AGGCGAu -3'
miRNA:   3'- gAGUGGUcUUGCCGCUaGCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 23710 0.71 0.78347
Target:  5'- uCUC-CCAG-ACGGCGAUggacgcgGUGAGCGAc -3'
miRNA:   3'- -GAGuGGUCuUGCCGCUAg------CAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 39709 0.71 0.78347
Target:  5'- -cCGCCAGuGACGGCGAcgacgcCGUcGACGAg -3'
miRNA:   3'- gaGUGGUC-UUGCCGCUa-----GCAuUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 5343 0.69 0.890589
Target:  5'- gUCGCCGagcGGGCGGCGAggacugGGACGAu -3'
miRNA:   3'- gAGUGGU---CUUGCCGCUagca--UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 44950 0.69 0.890589
Target:  5'- gUCgACgAGAACGGCGuUCGUc-GCGAg -3'
miRNA:   3'- gAG-UGgUCUUGCCGCuAGCAuuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 16591 0.69 0.883009
Target:  5'- aCUCGUCGGAGCGGCGAcugcugcgcugaUCGgucuGugGAa -3'
miRNA:   3'- -GAGUGGUCUUGCCGCU------------AGCau--UugCU- -5'
16306 5' -49.6 NC_004084.1 + 50254 0.69 0.875157
Target:  5'- gUCGCUGGAGCGGgcUGGUCGgc-ACGAc -3'
miRNA:   3'- gAGUGGUCUUGCC--GCUAGCauuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 54530 0.69 0.875157
Target:  5'- -gCACCuGGACGGCGAgaUCGUccGGCGc -3'
miRNA:   3'- gaGUGGuCUUGCCGCU--AGCAu-UUGCu -5'
16306 5' -49.6 NC_004084.1 + 18802 0.7 0.85004
Target:  5'- -aCAuCCAGGGCGuGUGGUCGgcGACGc -3'
miRNA:   3'- gaGU-GGUCUUGC-CGCUAGCauUUGCu -5'
16306 5' -49.6 NC_004084.1 + 31380 0.7 0.822756
Target:  5'- -aCACCAGAGaguucagccCGGCGAaggccggugUCGUAGAgGAg -3'
miRNA:   3'- gaGUGGUCUU---------GCCGCU---------AGCAUUUgCU- -5'
16306 5' -49.6 NC_004084.1 + 50060 0.7 0.813224
Target:  5'- cCUCACC-GggUGGCGAUUGcucuCGAa -3'
miRNA:   3'- -GAGUGGuCuuGCCGCUAGCauuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 29943 1.1 0.003924
Target:  5'- gCUCACCAGAACGGCGAUCGUAAACGAa -3'
miRNA:   3'- -GAGUGGUCUUGCCGCUAGCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 16503 0.66 0.970072
Target:  5'- aUCGCCAcAGCaGGCGAUCGcgucgccGCGGu -3'
miRNA:   3'- gAGUGGUcUUG-CCGCUAGCauu----UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.