miRNA display CGI


Results 41 - 60 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16306 5' -49.6 NC_004084.1 + 32782 0.69 0.86704
Target:  5'- uCUCA--AGAACGGCGAgaUCGUcuucGACGAg -3'
miRNA:   3'- -GAGUggUCUUGCCGCU--AGCAu---UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 13666 0.7 0.85004
Target:  5'- uUCGCCaaccuGGAGCaGGCcGUCGUAGAUGGc -3'
miRNA:   3'- gAGUGG-----UCUUG-CCGcUAGCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 1822 0.7 0.847405
Target:  5'- -gCACCAGAcgaugcaguugcggACGGUGAacucuUCGUcGACGAg -3'
miRNA:   3'- gaGUGGUCU--------------UGCCGCU-----AGCAuUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 4027 0.7 0.841174
Target:  5'- gUCgACUGGAACGGCGAUCGcgucaGAg -3'
miRNA:   3'- gAG-UGGUCUUGCCGCUAGCauuugCU- -5'
16306 5' -49.6 NC_004084.1 + 49323 0.7 0.822756
Target:  5'- gCUCGCUAcucucGAuauCGGCGAUCGUGu-CGAg -3'
miRNA:   3'- -GAGUGGU-----CUu--GCCGCUAGCAUuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 1013 0.7 0.822756
Target:  5'- gCUCGCCGGcGACGucgacGCGAUCGggGGCGc -3'
miRNA:   3'- -GAGUGGUC-UUGC-----CGCUAGCauUUGCu -5'
16306 5' -49.6 NC_004084.1 + 56919 0.71 0.773205
Target:  5'- cCUCGUCGGGACGGCGGacuUCGUAGuCGu -3'
miRNA:   3'- -GAGUGGUCUUGCCGCU---AGCAUUuGCu -5'
16306 5' -49.6 NC_004084.1 + 56792 0.71 0.773205
Target:  5'- -cCGCCAGaAGCGGUGAUCGgccaucuuCGAc -3'
miRNA:   3'- gaGUGGUC-UUGCCGCUAGCauuu----GCU- -5'
16306 5' -49.6 NC_004084.1 + 56612 0.68 0.897892
Target:  5'- gUCGCCGGu-CGGCGAguucgccggaUCGUggcucaGAACGAc -3'
miRNA:   3'- gAGUGGUCuuGCCGCU----------AGCA------UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 1454 0.68 0.904223
Target:  5'- uUCGCuCGGAccgcuucgcugauGCGGCGAUCG---ACGAc -3'
miRNA:   3'- gAGUG-GUCU-------------UGCCGCUAGCauuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 21991 0.68 0.907641
Target:  5'- gUCguaCAGGucuGCGGCGAUCGUcgaaagaccgugaccGAGCGAg -3'
miRNA:   3'- gAGug-GUCU---UGCCGCUAGCA---------------UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 16503 0.66 0.970072
Target:  5'- aUCGCCAcAGCaGGCGAUCGcgucgccGCGGu -3'
miRNA:   3'- gAGUGGUcUUG-CCGCUAGCauu----UGCU- -5'
16306 5' -49.6 NC_004084.1 + 53078 0.66 0.966717
Target:  5'- cCUCGCCGcccgcuCGGCGA-CGUGAucuuCGAg -3'
miRNA:   3'- -GAGUGGUcuu---GCCGCUaGCAUUu---GCU- -5'
16306 5' -49.6 NC_004084.1 + 14153 0.66 0.95923
Target:  5'- cCUCGCCgucgucgugaAGGcCGGuCGucccGUCGUAGACGAg -3'
miRNA:   3'- -GAGUGG----------UCUuGCC-GC----UAGCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 35898 0.66 0.955083
Target:  5'- --gGCCGGA--GGCGAUCGUcguCGAg -3'
miRNA:   3'- gagUGGUCUugCCGCUAGCAuuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 3625 0.66 0.954653
Target:  5'- gUCAUCGGGACuauggagGGCGAUCaGUAGcgcugGCGGg -3'
miRNA:   3'- gAGUGGUCUUG-------CCGCUAG-CAUU-----UGCU- -5'
16306 5' -49.6 NC_004084.1 + 37559 0.67 0.935681
Target:  5'- aUCGCCGGcGCGGuCGA-CGUgccacccucggcGAGCGAg -3'
miRNA:   3'- gAGUGGUCuUGCC-GCUaGCA------------UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 32045 0.68 0.924247
Target:  5'- uCUgACCAG-ACGGCGAuggauUCGguuGCGGc -3'
miRNA:   3'- -GAgUGGUCuUGCCGCU-----AGCauuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 1179 0.68 0.918092
Target:  5'- aUCGCCG--AC-GCGGUCGUGGACGu -3'
miRNA:   3'- gAGUGGUcuUGcCGCUAGCAUUUGCu -5'
16306 5' -49.6 NC_004084.1 + 278 0.68 0.918092
Target:  5'- --aGCUGGGgcagACGGUGAUCGUGucGCGAa -3'
miRNA:   3'- gagUGGUCU----UGCCGCUAGCAUu-UGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.