miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16306 5' -49.6 NC_004084.1 + 29943 1.1 0.003924
Target:  5'- gCUCACCAGAACGGCGAUCGUAAACGAa -3'
miRNA:   3'- -GAGUGGUCUUGCCGCUAGCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 49323 0.7 0.822756
Target:  5'- gCUCGCUAcucucGAuauCGGCGAUCGUGu-CGAg -3'
miRNA:   3'- -GAGUGGU-----CUu--GCCGCUAGCAUuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 10881 0.72 0.752224
Target:  5'- aCUgGCCGGAugAUGGCGAUCGU---CGGg -3'
miRNA:   3'- -GAgUGGUCU--UGCCGCUAGCAuuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 3625 0.66 0.954653
Target:  5'- gUCAUCGGGACuauggagGGCGAUCaGUAGcgcugGCGGg -3'
miRNA:   3'- gAGUGGUCUUG-------CCGCUAG-CAUU-----UGCU- -5'
16306 5' -49.6 NC_004084.1 + 21472 0.77 0.452716
Target:  5'- gCUCGCCcucgAGGGCGGCGAucgccucgguugcgUCGUAGGCGu -3'
miRNA:   3'- -GAGUGG----UCUUGCCGCU--------------AGCAUUUGCu -5'
16306 5' -49.6 NC_004084.1 + 35898 0.66 0.955083
Target:  5'- --gGCCGGA--GGCGAUCGUcguCGAg -3'
miRNA:   3'- gagUGGUCUugCCGCUAGCAuuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 14153 0.66 0.95923
Target:  5'- cCUCGCCgucgucgugaAGGcCGGuCGucccGUCGUAGACGAg -3'
miRNA:   3'- -GAGUGG----------UCUuGCC-GC----UAGCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 1013 0.7 0.822756
Target:  5'- gCUCGCCGGcGACGucgacGCGAUCGggGGCGc -3'
miRNA:   3'- -GAGUGGUC-UUGC-----CGCUAGCauUUGCu -5'
16306 5' -49.6 NC_004084.1 + 53236 0.72 0.719817
Target:  5'- gUCAUCuacGAGCgGGCGGUCGUcGACGGc -3'
miRNA:   3'- gAGUGGu--CUUG-CCGCUAGCAuUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 36493 0.66 0.95923
Target:  5'- uUCaACCGGGACuacuggGGcCGAUCG-AAACGAg -3'
miRNA:   3'- gAG-UGGUCUUG------CC-GCUAGCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 982 0.66 0.95923
Target:  5'- -cCACCGGGACGGCcug---AGACGAc -3'
miRNA:   3'- gaGUGGUCUUGCCGcuagcaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 50254 0.69 0.875157
Target:  5'- gUCGCUGGAGCGGgcUGGUCGgc-ACGAc -3'
miRNA:   3'- gAGUGGUCUUGCC--GCUAGCauuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 54530 0.69 0.875157
Target:  5'- -gCACCuGGACGGCGAgaUCGUccGGCGc -3'
miRNA:   3'- gaGUGGuCUUGCCGCU--AGCAu-UUGCu -5'
16306 5' -49.6 NC_004084.1 + 18802 0.7 0.85004
Target:  5'- -aCAuCCAGGGCGuGUGGUCGgcGACGc -3'
miRNA:   3'- gaGU-GGUCUUGC-CGCUAGCauUUGCu -5'
16306 5' -49.6 NC_004084.1 + 31380 0.7 0.822756
Target:  5'- -aCACCAGAGaguucagccCGGCGAaggccggugUCGUAGAgGAg -3'
miRNA:   3'- gaGUGGUCUU---------GCCGCU---------AGCAUUUgCU- -5'
16306 5' -49.6 NC_004084.1 + 47749 0.67 0.945953
Target:  5'- gUCGCUGcc-CGGCGAUCGcAAACGGc -3'
miRNA:   3'- gAGUGGUcuuGCCGCUAGCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 13215 0.67 0.949277
Target:  5'- aUCACCgaguacgaggagcaAGAAUGGCcGAUCGaggaGGGCGAa -3'
miRNA:   3'- gAGUGG--------------UCUUGCCG-CUAGCa---UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 10642 0.66 0.954653
Target:  5'- cCUCACC-GAcaucaacGCGGCG-UCGaUGAugGAu -3'
miRNA:   3'- -GAGUGGuCU-------UGCCGCuAGC-AUUugCU- -5'
16306 5' -49.6 NC_004084.1 + 11842 0.66 0.955083
Target:  5'- aUCGCCuG-ACGGCGAUaucgaGUucACGAc -3'
miRNA:   3'- gAGUGGuCuUGCCGCUAg----CAuuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 35465 0.66 0.955083
Target:  5'- aUCgACCAGGagcaggucgagGCGGCGAUCGc---CGAg -3'
miRNA:   3'- gAG-UGGUCU-----------UGCCGCUAGCauuuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.