miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16306 5' -49.6 NC_004084.1 + 29579 0.75 0.562785
Target:  5'- aUCGCCGGGugGGCG-UCGUucGCGc -3'
miRNA:   3'- gAGUGGUCUugCCGCuAGCAuuUGCu -5'
16306 5' -49.6 NC_004084.1 + 5343 0.69 0.890589
Target:  5'- gUCGCCGagcGGGCGGCGAggacugGGACGAu -3'
miRNA:   3'- gAGUGGU---CUUGCCGCUagca--UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 3160 0.69 0.893544
Target:  5'- -aCGCCGccGAccguagacgucgucgACGGCGAggaCGUGAACGAg -3'
miRNA:   3'- gaGUGGU--CU---------------UGCCGCUa--GCAUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 13215 0.67 0.949277
Target:  5'- aUCACCgaguacgaggagcaAGAAUGGCcGAUCGaggaGGGCGAa -3'
miRNA:   3'- gAGUGG--------------UCUUGCCG-CUAGCa---UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 10642 0.66 0.954653
Target:  5'- cCUCACC-GAcaucaacGCGGCG-UCGaUGAugGAu -3'
miRNA:   3'- -GAGUGGuCU-------UGCCGCuAGC-AUUugCU- -5'
16306 5' -49.6 NC_004084.1 + 11842 0.66 0.955083
Target:  5'- aUCGCCuG-ACGGCGAUaucgaGUucACGAc -3'
miRNA:   3'- gAGUGGuCuUGCCGCUAg----CAuuUGCU- -5'
16306 5' -49.6 NC_004084.1 + 35465 0.66 0.955083
Target:  5'- aUCgACCAGGagcaggucgagGCGGCGAUCGc---CGAg -3'
miRNA:   3'- gAG-UGGUCU-----------UGCCGCUAGCauuuGCU- -5'
16306 5' -49.6 NC_004084.1 + 982 0.66 0.95923
Target:  5'- -cCACCGGGACGGCcug---AGACGAc -3'
miRNA:   3'- gaGUGGUCUUGCCGcuagcaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 36493 0.66 0.95923
Target:  5'- uUCaACCGGGACuacuggGGcCGAUCG-AAACGAg -3'
miRNA:   3'- gAG-UGGUCUUG------CC-GCUAGCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 23867 0.67 0.940961
Target:  5'- cCUCGCgauGGAcGCGGUGAUCGcuucAGACGAu -3'
miRNA:   3'- -GAGUGg--UCU-UGCCGCUAGCa---UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 8164 0.66 0.963106
Target:  5'- cCUCGCCGccAACGGCGA-CGaGGACGc -3'
miRNA:   3'- -GAGUGGUc-UUGCCGCUaGCaUUUGCu -5'
16306 5' -49.6 NC_004084.1 + 23437 0.66 0.966717
Target:  5'- -aCACgCAG-GCGGCGAUgG-AAGCGGu -3'
miRNA:   3'- gaGUG-GUCuUGCCGCUAgCaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 28893 0.66 0.966717
Target:  5'- uCUCGCCGcGggUGGCGAagCGggugugcccgaGAGCGAc -3'
miRNA:   3'- -GAGUGGU-CuuGCCGCUa-GCa----------UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 51122 0.66 0.966717
Target:  5'- gCUCGuCCAGGAguacgcuugGGCGAUCccGAACGAg -3'
miRNA:   3'- -GAGU-GGUCUUg--------CCGCUAGcaUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 43786 0.66 0.970072
Target:  5'- gCUCGCCGGcggagaguccGGCGGCGAggagCGccgggAGAUGGa -3'
miRNA:   3'- -GAGUGGUC----------UUGCCGCUa---GCa----UUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 52271 0.66 0.970072
Target:  5'- aUCGCCAGGAacccCGGCGcuggucgcggaAUCGcaucgaccUGAACGAa -3'
miRNA:   3'- gAGUGGUCUU----GCCGC-----------UAGC--------AUUUGCU- -5'
16306 5' -49.6 NC_004084.1 + 53488 0.66 0.970072
Target:  5'- gUCAuCCAGuacgucGACGGCGAagUCGUcguGCGGu -3'
miRNA:   3'- gAGU-GGUC------UUGCCGCU--AGCAuu-UGCU- -5'
16306 5' -49.6 NC_004084.1 + 38901 0.67 0.935681
Target:  5'- aUCACguGAAUGGCGAUgacucGACGAc -3'
miRNA:   3'- gAGUGguCUUGCCGCUAgcau-UUGCU- -5'
16306 5' -49.6 NC_004084.1 + 399 0.67 0.929537
Target:  5'- cCUCACCgAGAGCGaGCaggagauGAUCGaGAGCGu -3'
miRNA:   3'- -GAGUGG-UCUUGC-CG-------CUAGCaUUUGCu -5'
16306 5' -49.6 NC_004084.1 + 17580 0.68 0.924247
Target:  5'- -gCACCAGAGCaGGCGGUUGaAAAaGGg -3'
miRNA:   3'- gaGUGGUCUUG-CCGCUAGCaUUUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.