miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16307 3' -55.6 NC_004084.1 + 33314 0.66 0.746229
Target:  5'- aGCGUcaACACCUGCcgCCG-CCGCgu-GAa -3'
miRNA:   3'- -CGCA--UGUGGAUGa-GGCcGGCGaugCU- -5'
16307 3' -55.6 NC_004084.1 + 57728 0.66 0.735899
Target:  5'- uGCGUGCACC-GCUCgaGGaCGUcgACGAa -3'
miRNA:   3'- -CGCAUGUGGaUGAGg-CCgGCGa-UGCU- -5'
16307 3' -55.6 NC_004084.1 + 39432 0.66 0.725467
Target:  5'- aGCGgg-ACCUACgacuuccccgCCGGCCGaCUggcGCGAg -3'
miRNA:   3'- -CGCaugUGGAUGa---------GGCCGGC-GA---UGCU- -5'
16307 3' -55.6 NC_004084.1 + 47110 0.66 0.714944
Target:  5'- cCGgucgGCACCUGCaUCCGGUgcgaCGCcgaGCGAg -3'
miRNA:   3'- cGCa---UGUGGAUG-AGGCCG----GCGa--UGCU- -5'
16307 3' -55.6 NC_004084.1 + 7868 0.66 0.704343
Target:  5'- uUGUACACCUcgaucGC-CCGGCgaaGCUGCu- -3'
miRNA:   3'- cGCAUGUGGA-----UGaGGCCGg--CGAUGcu -5'
16307 3' -55.6 NC_004084.1 + 57495 0.67 0.682943
Target:  5'- aGCGU-CACCaGCa--GGCCGCaGCGAa -3'
miRNA:   3'- -CGCAuGUGGaUGaggCCGGCGaUGCU- -5'
16307 3' -55.6 NC_004084.1 + 50882 0.67 0.661355
Target:  5'- gGCGUAgACCUAaaUCCGaGUuCGUUGCGAu -3'
miRNA:   3'- -CGCAUgUGGAUg-AGGC-CG-GCGAUGCU- -5'
16307 3' -55.6 NC_004084.1 + 26415 0.67 0.647261
Target:  5'- gGCGUaauucgagcccuccAgGCCcGCUCUGGCgGCUACa- -3'
miRNA:   3'- -CGCA--------------UgUGGaUGAGGCCGgCGAUGcu -5'
16307 3' -55.6 NC_004084.1 + 20681 0.67 0.639661
Target:  5'- cGCGUACGagCUACUCCaggaGGCCgaaGCUaACGGc -3'
miRNA:   3'- -CGCAUGUg-GAUGAGG----CCGG---CGA-UGCU- -5'
16307 3' -55.6 NC_004084.1 + 53356 0.68 0.61794
Target:  5'- uGCGU-CGUCUACUCCGccgaCCGCUACa- -3'
miRNA:   3'- -CGCAuGUGGAUGAGGCc---GGCGAUGcu -5'
16307 3' -55.6 NC_004084.1 + 29855 0.68 0.596267
Target:  5'- gGCGgaACACCUAUUCCcgauggGGUCGUgACGAa -3'
miRNA:   3'- -CGCa-UGUGGAUGAGG------CCGGCGaUGCU- -5'
16307 3' -55.6 NC_004084.1 + 29160 0.68 0.58547
Target:  5'- gGCGUACaACCUGguuCgagCCGGgCGCgACGAg -3'
miRNA:   3'- -CGCAUG-UGGAU---Ga--GGCCgGCGaUGCU- -5'
16307 3' -55.6 NC_004084.1 + 51231 0.69 0.563999
Target:  5'- uGCGUcgaGCAgCUcgACgUCCGGaUCGCUGCGAc -3'
miRNA:   3'- -CGCA---UGUgGA--UG-AGGCC-GGCGAUGCU- -5'
16307 3' -55.6 NC_004084.1 + 58261 0.7 0.480797
Target:  5'- cGCGaccacUACGCCUGCcCUGGCUGCggGCGc -3'
miRNA:   3'- -CGC-----AUGUGGAUGaGGCCGGCGa-UGCu -5'
16307 3' -55.6 NC_004084.1 + 13093 0.72 0.386071
Target:  5'- aGCGaa-ACCUACUCCGGCacgGCUcugACGGa -3'
miRNA:   3'- -CGCaugUGGAUGAGGCCGg--CGA---UGCU- -5'
16307 3' -55.6 NC_004084.1 + 27647 0.73 0.330676
Target:  5'- cGCGUACGCCUcgaggaggucgcucgACUCCGGuCCGUacACGu -3'
miRNA:   3'- -CGCAUGUGGA---------------UGAGGCC-GGCGa-UGCu -5'
16307 3' -55.6 NC_004084.1 + 29794 1.11 0.000828
Target:  5'- gGCGUACACCUACUCCGGCCGCUACGAg -3'
miRNA:   3'- -CGCAUGUGGAUGAGGCCGGCGAUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.