miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16307 5' -58.9 NC_004084.1 + 17277 0.66 0.569393
Target:  5'- uGCC-CUcgGUGgaggCgGUGGCGGCGGUGGc -3'
miRNA:   3'- cUGGuGA--CGCa---GgCAUCGUCGCCGCC- -5'
16307 5' -58.9 NC_004084.1 + 26927 0.66 0.558891
Target:  5'- cGGCgACUGCcUCCaucGC-GCGGCGGa -3'
miRNA:   3'- -CUGgUGACGcAGGcauCGuCGCCGCC- -5'
16307 5' -58.9 NC_004084.1 + 15095 0.66 0.538059
Target:  5'- -uCCACUcGuCGUCgGUGugaccGUAGCGGUGGa -3'
miRNA:   3'- cuGGUGA-C-GCAGgCAU-----CGUCGCCGCC- -5'
16307 5' -58.9 NC_004084.1 + 49134 0.67 0.507338
Target:  5'- uGAuCCACUucucgaccGUcUCUGUAGCGGCGGCa- -3'
miRNA:   3'- -CU-GGUGA--------CGcAGGCAUCGUCGCCGcc -5'
16307 5' -58.9 NC_004084.1 + 34941 0.67 0.487276
Target:  5'- -gUCACggGCGUUCGUGcGCuAGCGGCuGGu -3'
miRNA:   3'- cuGGUGa-CGCAGGCAU-CG-UCGCCG-CC- -5'
16307 5' -58.9 NC_004084.1 + 34553 0.68 0.448336
Target:  5'- cGAUCACcGCGUCCaucgcgagGGCgcuGGCGGCGa -3'
miRNA:   3'- -CUGGUGaCGCAGGca------UCG---UCGCCGCc -5'
16307 5' -58.9 NC_004084.1 + 9445 0.7 0.342899
Target:  5'- ---uGCUGCGggacgCCGUAGuCGGCGGCa- -3'
miRNA:   3'- cuggUGACGCa----GGCAUC-GUCGCCGcc -5'
16307 5' -58.9 NC_004084.1 + 25082 0.7 0.319488
Target:  5'- aGGCCucaGCUGCaUCCuucacGCGGCGGCGGc -3'
miRNA:   3'- -CUGG---UGACGcAGGcau--CGUCGCCGCC- -5'
16307 5' -58.9 NC_004084.1 + 16312 0.71 0.27227
Target:  5'- cGACCACUGCGaacaCCGcAGCAcugaccgggaagaccGCGGCGc -3'
miRNA:   3'- -CUGGUGACGCa---GGCaUCGU---------------CGCCGCc -5'
16307 5' -58.9 NC_004084.1 + 14356 0.72 0.250214
Target:  5'- uGGCCGCgugGCGaggaucaccaUCUGUacGGCGGCGGCGa -3'
miRNA:   3'- -CUGGUGa--CGC----------AGGCA--UCGUCGCCGCc -5'
16307 5' -58.9 NC_004084.1 + 29833 1.1 0.000397
Target:  5'- cGACCACUGCGUCCGUAGCAGCGGCGGa -3'
miRNA:   3'- -CUGGUGACGCAGGCAUCGUCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.