miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16308 5' -65.6 NC_004084.1 + 41199 0.66 0.27911
Target:  5'- cACGACGCCCgCGAcGCuGGCGaaaCGCc -3'
miRNA:   3'- -UGCUGCGGGgGCU-CGcCCGCca-GCGc -5'
16308 5' -65.6 NC_004084.1 + 41306 0.69 0.180666
Target:  5'- uCGACGUCCUgGAGCGGacCGGcgagCGCGg -3'
miRNA:   3'- uGCUGCGGGGgCUCGCCc-GCCa---GCGC- -5'
16308 5' -65.6 NC_004084.1 + 42020 0.7 0.159374
Target:  5'- -aGugGCCgUCgCGAGCGaGGCGGUCGaCa -3'
miRNA:   3'- ugCugCGG-GG-GCUCGC-CCGCCAGC-Gc -5'
16308 5' -65.6 NC_004084.1 + 44014 0.66 0.285012
Target:  5'- gACGAacuucgagaacauCGCCCCgaucucgcCGAGUGGGaGGUgCGCGa -3'
miRNA:   3'- -UGCU-------------GCGGGG--------GCUCGCCCgCCA-GCGC- -5'
16308 5' -65.6 NC_004084.1 + 44598 0.67 0.254055
Target:  5'- -aGAgGUCaucgCCGAGUGGGCcgaucgccucGGUCGCGa -3'
miRNA:   3'- ugCUgCGGg---GGCUCGCCCG----------CCAGCGC- -5'
16308 5' -65.6 NC_004084.1 + 45962 0.68 0.204439
Target:  5'- aACGAUGUgUCCGAGuCGGcuccuGCGGUCGUc -3'
miRNA:   3'- -UGCUGCGgGGGCUC-GCC-----CGCCAGCGc -5'
16308 5' -65.6 NC_004084.1 + 46862 0.67 0.230877
Target:  5'- gUGaACGUCUCCu-GUGGGCGGUCuGCGa -3'
miRNA:   3'- uGC-UGCGGGGGcuCGCCCGCCAG-CGC- -5'
16308 5' -65.6 NC_004084.1 + 50016 0.67 0.248087
Target:  5'- cACGuuGUCgCCGAGCGGGgugucccgguCGGUCaGCGu -3'
miRNA:   3'- -UGCugCGGgGGCUCGCCC----------GCCAG-CGC- -5'
16308 5' -65.6 NC_004084.1 + 50250 0.69 0.171862
Target:  5'- -aGGCGUCgCUgGAGCGGGCuGGUCgGCa -3'
miRNA:   3'- ugCUGCGG-GGgCUCGCCCG-CCAG-CGc -5'
16308 5' -65.6 NC_004084.1 + 53219 0.68 0.202442
Target:  5'- uCGAguCGCaCCgucgugucaucuaCGAGCGGGCGGUCGuCGa -3'
miRNA:   3'- uGCU--GCG-GGg------------GCUCGCCCGCCAGC-GC- -5'
16308 5' -65.6 NC_004084.1 + 54112 0.71 0.136831
Target:  5'- gACGACGCCCgCGAucaccgGCGGGaC-GUCGUGg -3'
miRNA:   3'- -UGCUGCGGGgGCU------CGCCC-GcCAGCGC- -5'
16308 5' -65.6 NC_004084.1 + 54657 0.66 0.292358
Target:  5'- aACGGCaCCUgUGucAGCGGGUuuccGGUCGCGa -3'
miRNA:   3'- -UGCUGcGGGgGC--UCGCCCG----CCAGCGC- -5'
16308 5' -65.6 NC_004084.1 + 54812 0.69 0.180666
Target:  5'- gAUGACGCCCCCGcgauauucGCGGaaaCGGUCGa- -3'
miRNA:   3'- -UGCUGCGGGGGCu-------CGCCc--GCCAGCgc -5'
16308 5' -65.6 NC_004084.1 + 58043 0.68 0.199477
Target:  5'- gGCGACGUCCCCGGGCucGCGG-Ca-- -3'
miRNA:   3'- -UGCUGCGGGGGCUCGccCGCCaGcgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.