Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16308 | 5' | -65.6 | NC_004084.1 | + | 54112 | 0.71 | 0.136831 |
Target: 5'- gACGACGCCCgCGAucaccgGCGGGaC-GUCGUGg -3' miRNA: 3'- -UGCUGCGGGgGCU------CGCCC-GcCAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 36254 | 0.72 | 0.114253 |
Target: 5'- uCGACGUCCUCGAGUGcgccgaGGCGcUCGCGg -3' miRNA: 3'- uGCUGCGGGGGCUCGC------CCGCcAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 8182 | 0.72 | 0.111327 |
Target: 5'- aGCGACGCCUCaGAGUGGG-GuUCGCGg -3' miRNA: 3'- -UGCUGCGGGGgCUCGCCCgCcAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 690 | 0.69 | 0.185216 |
Target: 5'- uCGACGUCCUCGAGCGGuGCa--CGCa -3' miRNA: 3'- uGCUGCGGGGGCUCGCC-CGccaGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 45962 | 0.68 | 0.204439 |
Target: 5'- aACGAUGUgUCCGAGuCGGcuccuGCGGUCGUc -3' miRNA: 3'- -UGCUGCGgGGGCUC-GCC-----CGCCAGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 26147 | 0.68 | 0.219971 |
Target: 5'- aGC-ACGCCCagguUGGGCGGGCaGUCGaCGa -3' miRNA: 3'- -UGcUGCGGGg---GCUCGCCCGcCAGC-GC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 46862 | 0.67 | 0.230877 |
Target: 5'- gUGaACGUCUCCu-GUGGGCGGUCuGCGa -3' miRNA: 3'- uGC-UGCGGGGGcuCGCCCGCCAG-CGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 35048 | 0.67 | 0.230877 |
Target: 5'- gAUGAuCGCCUgauaCCG-GCaGGCGGUCGCc -3' miRNA: 3'- -UGCU-GCGGG----GGCuCGcCCGCCAGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 21460 | 0.67 | 0.242235 |
Target: 5'- gACGAggaaccggcuCGCCCUCGAGgGcGGCGaUCGCc -3' miRNA: 3'- -UGCU----------GCGGGGGCUCgC-CCGCcAGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 50016 | 0.67 | 0.248087 |
Target: 5'- cACGuuGUCgCCGAGCGGGgugucccgguCGGUCaGCGu -3' miRNA: 3'- -UGCugCGGgGGCUCGCCC----------GCCAG-CGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 1693 | 0.67 | 0.248087 |
Target: 5'- gAUGAUGUCCggCCGAGUGugcuucaGUGGUCGCGg -3' miRNA: 3'- -UGCUGCGGG--GGCUCGCc------CGCCAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 13753 | 0.66 | 0.278461 |
Target: 5'- uCGGCucGCCCUCGAGgucgcgcUGGGCGGgcucggagaUCGCGu -3' miRNA: 3'- uGCUG--CGGGGGCUC-------GCCCGCC---------AGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 35945 | 0.66 | 0.299165 |
Target: 5'- cCGGCGUCgCCgGGGUcGGCGGcCGUGa -3' miRNA: 3'- uGCUGCGG-GGgCUCGcCCGCCaGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 29348 | 1.08 | 0.000172 |
Target: 5'- gACGACGCCCCCGAGCGGGCGGUCGCGg -3' miRNA: 3'- -UGCUGCGGGGGCUCGCCCGCCAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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