Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16308 | 5' | -65.6 | NC_004084.1 | + | 29348 | 1.08 | 0.000172 |
Target: 5'- gACGACGCCCCCGAGCGGGCGGUCGCGg -3' miRNA: 3'- -UGCUGCGGGGGCUCGCCCGCCAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 17272 | 0.75 | 0.05909 |
Target: 5'- gGCGAUGCCCUCG-GUGgaGGCGGUgGCGg -3' miRNA: 3'- -UGCUGCGGGGGCuCGC--CCGCCAgCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 8182 | 0.72 | 0.111327 |
Target: 5'- aGCGACGCCUCaGAGUGGG-GuUCGCGg -3' miRNA: 3'- -UGCUGCGGGGgCUCGCCCgCcAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 36254 | 0.72 | 0.114253 |
Target: 5'- uCGACGUCCUCGAGUGcgccgaGGCGcUCGCGg -3' miRNA: 3'- uGCUGCGGGGGCUCGC------CCGCcAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 54112 | 0.71 | 0.136831 |
Target: 5'- gACGACGCCCgCGAucaccgGCGGGaC-GUCGUGg -3' miRNA: 3'- -UGCUGCGGGgGCU------CGCCC-GcCAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 940 | 0.7 | 0.144 |
Target: 5'- gUGACGCUCCCGGaggaggucGCGGGCcaucUCGCGg -3' miRNA: 3'- uGCUGCGGGGGCU--------CGCCCGcc--AGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 42020 | 0.7 | 0.159374 |
Target: 5'- -aGugGCCgUCgCGAGCGaGGCGGUCGaCa -3' miRNA: 3'- ugCugCGG-GG-GCUCGC-CCGCCAGC-Gc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 26928 | 0.69 | 0.163443 |
Target: 5'- gGCGACuGCCUCCaucGCGcGGCGGaCGCGc -3' miRNA: 3'- -UGCUG-CGGGGGcu-CGC-CCGCCaGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 50250 | 0.69 | 0.171862 |
Target: 5'- -aGGCGUCgCUgGAGCGGGCuGGUCgGCa -3' miRNA: 3'- ugCUGCGG-GGgCUCGCCCG-CCAG-CGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 11411 | 0.69 | 0.171862 |
Target: 5'- cGCGACGUCCUCGAGgaacucGCGGUCGUc -3' miRNA: 3'- -UGCUGCGGGGGCUCgcc---CGCCAGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 41306 | 0.69 | 0.180666 |
Target: 5'- uCGACGUCCUgGAGCGGacCGGcgagCGCGg -3' miRNA: 3'- uGCUGCGGGGgCUCGCCc-GCCa---GCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 54812 | 0.69 | 0.180666 |
Target: 5'- gAUGACGCCCCCGcgauauucGCGGaaaCGGUCGa- -3' miRNA: 3'- -UGCUGCGGGGGCu-------CGCCc--GCCAGCgc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 690 | 0.69 | 0.185216 |
Target: 5'- uCGACGUCCUCGAGCGGuGCa--CGCa -3' miRNA: 3'- uGCUGCGGGGGCUCGCC-CGccaGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 5340 | 0.69 | 0.185216 |
Target: 5'- --cACGUCgCCGAGCGGGCGG-CGa- -3' miRNA: 3'- ugcUGCGGgGGCUCGCCCGCCaGCgc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 4297 | 0.69 | 0.189867 |
Target: 5'- cACGACGuCCCgCCGGugaucGCGGGC-GUCGuCGa -3' miRNA: 3'- -UGCUGC-GGG-GGCU-----CGCCCGcCAGC-GC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 58043 | 0.68 | 0.199477 |
Target: 5'- gGCGACGUCCCCGGGCucGCGG-Ca-- -3' miRNA: 3'- -UGCUGCGGGGGCUCGccCGCCaGcgc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 53219 | 0.68 | 0.202442 |
Target: 5'- uCGAguCGCaCCgucgugucaucuaCGAGCGGGCGGUCGuCGa -3' miRNA: 3'- uGCU--GCG-GGg------------GCUCGCCCGCCAGC-GC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 45962 | 0.68 | 0.204439 |
Target: 5'- aACGAUGUgUCCGAGuCGGcuccuGCGGUCGUc -3' miRNA: 3'- -UGCUGCGgGGGCUC-GCC-----CGCCAGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 26147 | 0.68 | 0.219971 |
Target: 5'- aGC-ACGCCCagguUGGGCGGGCaGUCGaCGa -3' miRNA: 3'- -UGcUGCGGGg---GCUCGCCCGcCAGC-GC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 46862 | 0.67 | 0.230877 |
Target: 5'- gUGaACGUCUCCu-GUGGGCGGUCuGCGa -3' miRNA: 3'- uGC-UGCGGGGGcuCGCCCGCCAG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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