miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16309 3' -53.8 NC_004084.1 + 10457 0.67 0.797753
Target:  5'- aGUACUCGa--GCGGAcCAACGUCGuuCGu -3'
miRNA:   3'- -CAUGAGCgggCGCUU-GUUGCAGCu-GC- -5'
16309 3' -53.8 NC_004084.1 + 14639 0.67 0.797753
Target:  5'- -gACUcucCGCCgGCGAGCGcccaGUCGAUGc -3'
miRNA:   3'- caUGA---GCGGgCGCUUGUug--CAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 49569 0.67 0.797753
Target:  5'- cGUACUCGaaguaCCGCuuuu--CGUCGACGa -3'
miRNA:   3'- -CAUGAGCg----GGCGcuuguuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 55555 0.67 0.797753
Target:  5'- -gGCUgGCCgCGaCGAACu-CGUCGGCc -3'
miRNA:   3'- caUGAgCGG-GC-GCUUGuuGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 2284 0.67 0.79486
Target:  5'- -gGCUgGUcgacgccgacgacaCUGCGGcgcACGACGUCGACGa -3'
miRNA:   3'- caUGAgCG--------------GGCGCU---UGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 46178 0.67 0.791951
Target:  5'- -aACUUGCCCagcugguaggcgGCGAGaucgucgucggauGCGUCGACGa -3'
miRNA:   3'- caUGAGCGGG------------CGCUUgu-----------UGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 12841 0.67 0.78805
Target:  5'- gGUugUUGaaCGCGAACc-CGUCGGCGu -3'
miRNA:   3'- -CAugAGCggGCGCUUGuuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 46263 0.67 0.78805
Target:  5'- --cCUCGUgUGCGAcauccaucGCuuCGUCGACGg -3'
miRNA:   3'- cauGAGCGgGCGCU--------UGuuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 56437 0.67 0.78805
Target:  5'- -cAC-CGUC-GCGAACGACGaucUCGACGg -3'
miRNA:   3'- caUGaGCGGgCGCUUGUUGC---AGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 9426 0.67 0.78805
Target:  5'- -cACggaCCgCGCGAugggccGCGACGUCGACGa -3'
miRNA:   3'- caUGagcGG-GCGCU------UGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 14241 0.67 0.778186
Target:  5'- aUACUgGCCgG-GAACAGUGUCGACc -3'
miRNA:   3'- cAUGAgCGGgCgCUUGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 50449 0.67 0.768173
Target:  5'- -cACUCGCCCuCGucCuGCGgUCGGCGg -3'
miRNA:   3'- caUGAGCGGGcGCuuGuUGC-AGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 38734 0.67 0.768173
Target:  5'- aGUGCUCGgugaaCGCGAugc-CGUCGACGa -3'
miRNA:   3'- -CAUGAGCgg---GCGCUuguuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 5644 0.67 0.765141
Target:  5'- -cACUCgagGCUgGCGAGCGGauccagaaagccacCGUCGACGa -3'
miRNA:   3'- caUGAG---CGGgCGCUUGUU--------------GCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 27060 0.67 0.758021
Target:  5'- ---gUCGaUCgCGCGAugcuCGACGUCGACGa -3'
miRNA:   3'- caugAGC-GG-GCGCUu---GUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 39323 0.67 0.758021
Target:  5'- -aGC-CG-CCGCGGugcugauCGACGUCGACGu -3'
miRNA:   3'- caUGaGCgGGCGCUu------GUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 36421 0.67 0.758021
Target:  5'- --gUUCGUCCGCGcgu--CGUCGACGu -3'
miRNA:   3'- cauGAGCGGGCGCuuguuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 22988 0.67 0.758021
Target:  5'- cUGgUCGaCCuCGCGAGCGAgaUCGACGa -3'
miRNA:   3'- cAUgAGC-GG-GCGCUUGUUgcAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 26283 0.67 0.758021
Target:  5'- gGUGC-CGCUCGCGAGgucUGUCGACc -3'
miRNA:   3'- -CAUGaGCGGGCGCUUguuGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 50688 0.68 0.747741
Target:  5'- -aGCUCGCCagcgagGCGAAgGACGUCcuCGa -3'
miRNA:   3'- caUGAGCGGg-----CGCUUgUUGCAGcuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.