miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1631 3' -64.1 NC_001347.2 + 40588 0.66 0.721275
Target:  5'- cUUGUCGGggguuuucgagcguuCUGGCCGCCGgCGAUgCCg -3'
miRNA:   3'- cAGCAGCC---------------GGCUGGCGGC-GCUGgGGg -5'
1631 3' -64.1 NC_001347.2 + 93144 0.66 0.717672
Target:  5'- uUCGgcgGGCgGACCGCucucguucCGCGGCCCg- -3'
miRNA:   3'- cAGCag-CCGgCUGGCG--------GCGCUGGGgg -5'
1631 3' -64.1 NC_001347.2 + 90251 0.66 0.716769
Target:  5'- cGUCGUCuacgacggcguuuGGCCcgagacccACCGCCGUucuuuuCCCCCg -3'
miRNA:   3'- -CAGCAG-------------CCGGc-------UGGCGGCGcu----GGGGG- -5'
1631 3' -64.1 NC_001347.2 + 200614 0.66 0.708623
Target:  5'- -gCGUCgGGCUGcgcGCCGUCGaGACCCUg -3'
miRNA:   3'- caGCAG-CCGGC---UGGCGGCgCUGGGGg -5'
1631 3' -64.1 NC_001347.2 + 28261 0.66 0.708623
Target:  5'- -aCGUCGGC--GCCGacCCGgGACCCUg -3'
miRNA:   3'- caGCAGCCGgcUGGC--GGCgCUGGGGg -5'
1631 3' -64.1 NC_001347.2 + 134899 0.66 0.699522
Target:  5'- gGUCGU-GGUcuccuCGGCCcguGCCGgGACCCUCc -3'
miRNA:   3'- -CAGCAgCCG-----GCUGG---CGGCgCUGGGGG- -5'
1631 3' -64.1 NC_001347.2 + 181733 0.66 0.699522
Target:  5'- -cCGUCcugCGACCGCUGCGugCgCCg -3'
miRNA:   3'- caGCAGccgGCUGGCGGCGCugGgGG- -5'
1631 3' -64.1 NC_001347.2 + 190048 0.66 0.699522
Target:  5'- cUCGaCGGg-GACCGCCGCcguagguuCCCCCg -3'
miRNA:   3'- cAGCaGCCggCUGGCGGCGcu------GGGGG- -5'
1631 3' -64.1 NC_001347.2 + 185034 0.66 0.699522
Target:  5'- gGUCcaguUCGGCCGGCgCGCgcuugagcugUGCGAUgCCCu -3'
miRNA:   3'- -CAGc---AGCCGGCUG-GCG----------GCGCUGgGGG- -5'
1631 3' -64.1 NC_001347.2 + 68731 0.66 0.694038
Target:  5'- cUCGUCggaGGCCGuggagcgaguGCCGCCGCaGCcggcagagcgccgaaCCCCg -3'
miRNA:   3'- cAGCAG---CCGGC----------UGGCGGCGcUG---------------GGGG- -5'
1631 3' -64.1 NC_001347.2 + 178882 0.66 0.690373
Target:  5'- aGUUGUCcucGUCG-CCGCCGCuGCCgCCg -3'
miRNA:   3'- -CAGCAGc--CGGCuGGCGGCGcUGGgGG- -5'
1631 3' -64.1 NC_001347.2 + 153760 0.66 0.690373
Target:  5'- gGUCGggUCGcGCCaGugCGCCGuCGACgCCg -3'
miRNA:   3'- -CAGC--AGC-CGG-CugGCGGC-GCUGgGGg -5'
1631 3' -64.1 NC_001347.2 + 84620 0.66 0.690373
Target:  5'- cGUCGUgggUGGCCucgcgguGGCUGCCGCuacuacugucguuuCCCCCg -3'
miRNA:   3'- -CAGCA---GCCGG-------CUGGCGGCGcu------------GGGGG- -5'
1631 3' -64.1 NC_001347.2 + 23251 0.66 0.690373
Target:  5'- -cCGggaCGGCCuGGgCGCCcccacccccGCGACCCUCg -3'
miRNA:   3'- caGCa--GCCGG-CUgGCGG---------CGCUGGGGG- -5'
1631 3' -64.1 NC_001347.2 + 67708 0.66 0.690373
Target:  5'- cUCGUUcuuGCCG-CCGCCGCcauGGCCUUCg -3'
miRNA:   3'- cAGCAGc--CGGCuGGCGGCG---CUGGGGG- -5'
1631 3' -64.1 NC_001347.2 + 78667 0.66 0.681185
Target:  5'- uGUUGgaGGCCGugCGCaaggcgcgcgaCGCGGCgCCCu -3'
miRNA:   3'- -CAGCagCCGGCugGCG-----------GCGCUGgGGG- -5'
1631 3' -64.1 NC_001347.2 + 890 0.66 0.681185
Target:  5'- ----aCGGCaUG-UCGCCGCGcCCCCCg -3'
miRNA:   3'- cagcaGCCG-GCuGGCGGCGCuGGGGG- -5'
1631 3' -64.1 NC_001347.2 + 123555 0.66 0.681185
Target:  5'- -cUGUCG--CGGCUGCCGCG-CUCCCg -3'
miRNA:   3'- caGCAGCcgGCUGGCGGCGCuGGGGG- -5'
1631 3' -64.1 NC_001347.2 + 89697 0.66 0.681185
Target:  5'- -gCGcCGGCCccGCCGCCGCcACCacuaCCa -3'
miRNA:   3'- caGCaGCCGGc-UGGCGGCGcUGGg---GG- -5'
1631 3' -64.1 NC_001347.2 + 62977 0.66 0.681185
Target:  5'- gGUCGaUCGGCaaaccguacUGACCGCUgagaGCGcGCCCgCCa -3'
miRNA:   3'- -CAGC-AGCCG---------GCUGGCGG----CGC-UGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.