miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1631 5' -53 NC_001347.2 + 2404 0.66 0.987904
Target:  5'- --cGAGGCCgCGCGGcGGcugcuGCCCGAgcuggaccgcGAGCa -3'
miRNA:   3'- uuuUUUCGG-GCGUC-CC-----CGGGUU----------UUCG- -5'
1631 5' -53 NC_001347.2 + 164826 0.66 0.987904
Target:  5'- --cAGGGCCgGCAGGGcCCCuucgccGCa -3'
miRNA:   3'- uuuUUUCGGgCGUCCCcGGGuuuu--CG- -5'
1631 5' -53 NC_001347.2 + 180485 0.66 0.986323
Target:  5'- -----cGCCCu--GGGGCCCuucguGGGCa -3'
miRNA:   3'- uuuuuuCGGGcguCCCCGGGuu---UUCG- -5'
1631 5' -53 NC_001347.2 + 44377 0.66 0.986323
Target:  5'- -----cGCCCGCcGGGGCuucuggagaacgCCGGGgcAGCa -3'
miRNA:   3'- uuuuuuCGGGCGuCCCCG------------GGUUU--UCG- -5'
1631 5' -53 NC_001347.2 + 190162 0.66 0.982689
Target:  5'- -----uGCCgGCaugGGGGGCgCCAAAAcGCc -3'
miRNA:   3'- uuuuuuCGGgCG---UCCCCG-GGUUUU-CG- -5'
1631 5' -53 NC_001347.2 + 191760 0.66 0.982689
Target:  5'- -cGAuAGuCCUGCucGGGGUCCAuguGGCg -3'
miRNA:   3'- uuUUuUC-GGGCGu-CCCCGGGUuu-UCG- -5'
1631 5' -53 NC_001347.2 + 127116 0.66 0.982689
Target:  5'- ---cGAGCCCGCGcuGGCaCCGcugcuGGAGCg -3'
miRNA:   3'- uuuuUUCGGGCGUccCCG-GGU-----UUUCG- -5'
1631 5' -53 NC_001347.2 + 36682 0.66 0.982689
Target:  5'- ---cGGGCuCCgGCGGGuGGCCU--GAGCa -3'
miRNA:   3'- uuuuUUCG-GG-CGUCC-CCGGGuuUUCG- -5'
1631 5' -53 NC_001347.2 + 60547 0.66 0.982086
Target:  5'- uGGAAGGUagauuacgacagauCCGUugcgguuGGGCCCAAAAGCu -3'
miRNA:   3'- uUUUUUCG--------------GGCGuc-----CCCGGGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 137059 0.66 0.98062
Target:  5'- ---uAGGCuuGuCAGGGGUCacgugAGAAGCg -3'
miRNA:   3'- uuuuUUCGggC-GUCCCCGGg----UUUUCG- -5'
1631 5' -53 NC_001347.2 + 39353 0.66 0.98062
Target:  5'- ----cGGCCCGCGGGGuucuaCCCGGuGGa -3'
miRNA:   3'- uuuuuUCGGGCGUCCCc----GGGUUuUCg -5'
1631 5' -53 NC_001347.2 + 81696 0.66 0.98062
Target:  5'- -cGAGAGCgCGCAGGGuuCCAccuccAGCu -3'
miRNA:   3'- uuUUUUCGgGCGUCCCcgGGUuu---UCG- -5'
1631 5' -53 NC_001347.2 + 73714 0.67 0.975936
Target:  5'- --cGGGGUCCGCGGGcaccGCcgCCGGAGGCg -3'
miRNA:   3'- uuuUUUCGGGCGUCCc---CG--GGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 87867 0.67 0.975936
Target:  5'- uAGAGAGCUCGCAGa-GCUCGGGAuGCg -3'
miRNA:   3'- uUUUUUCGGGCGUCccCGGGUUUU-CG- -5'
1631 5' -53 NC_001347.2 + 38775 0.67 0.975936
Target:  5'- -----cGCgCGCGGGGuGCCCAcgcccAGCc -3'
miRNA:   3'- uuuuuuCGgGCGUCCC-CGGGUuu---UCG- -5'
1631 5' -53 NC_001347.2 + 135687 0.67 0.975936
Target:  5'- aAGGGGAGCUgGguGGGGgaucCCCGGucGCc -3'
miRNA:   3'- -UUUUUUCGGgCguCCCC----GGGUUuuCG- -5'
1631 5' -53 NC_001347.2 + 16056 0.67 0.973305
Target:  5'- ------uCCUGCAGGuacGGCCCGGcAGCa -3'
miRNA:   3'- uuuuuucGGGCGUCC---CCGGGUUuUCG- -5'
1631 5' -53 NC_001347.2 + 92251 0.67 0.970473
Target:  5'- -----uGCCCGCAGGccguGGCCgCcgccauGAGGCg -3'
miRNA:   3'- uuuuuuCGGGCGUCC----CCGG-Gu-----UUUCG- -5'
1631 5' -53 NC_001347.2 + 136082 0.67 0.970178
Target:  5'- gGGAcgGGCCCGCGGacggaccggcgccGGGCCUcggccgggGAGGGUg -3'
miRNA:   3'- -UUUuuUCGGGCGUC-------------CCCGGG--------UUUUCG- -5'
1631 5' -53 NC_001347.2 + 206697 0.67 0.967431
Target:  5'- ---cGGGCCUcUGGGGGCCgCAcGGAGCg -3'
miRNA:   3'- uuuuUUCGGGcGUCCCCGG-GU-UUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.