miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1631 5' -53 NC_001347.2 + 135643 1.09 0.006855
Target:  5'- aAAAAAAGCCCGCAGGGGCCCAAAAGCc -3'
miRNA:   3'- -UUUUUUCGGGCGUCCCCGGGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 210728 0.78 0.476671
Target:  5'- cAAGAAGCgaCCGCAGuGGGCCCAc-AGCa -3'
miRNA:   3'- uUUUUUCG--GGCGUC-CCCGGGUuuUCG- -5'
1631 5' -53 NC_001347.2 + 135194 0.76 0.586598
Target:  5'- ----cAGCCUGguGGGGUCC-GAGGCg -3'
miRNA:   3'- uuuuuUCGGGCguCCCCGGGuUUUCG- -5'
1631 5' -53 NC_001347.2 + 185487 0.75 0.638408
Target:  5'- ----uGGCgCGCAGGGGCuCCGAcguGGCg -3'
miRNA:   3'- uuuuuUCGgGCGUCCCCG-GGUUu--UCG- -5'
1631 5' -53 NC_001347.2 + 13131 0.74 0.72056
Target:  5'- cAAAcAGCCCGCuacGGGCCCGugcGGCg -3'
miRNA:   3'- uUUUuUCGGGCGuc-CCCGGGUuu-UCG- -5'
1631 5' -53 NC_001347.2 + 138962 0.74 0.72056
Target:  5'- ----uAGCgCCGguGGGGCCCGc-GGCu -3'
miRNA:   3'- uuuuuUCG-GGCguCCCCGGGUuuUCG- -5'
1631 5' -53 NC_001347.2 + 155566 0.74 0.72758
Target:  5'- --cGGAGCCCGCGGcugguacgagcgguGGGCUCGAGGGg -3'
miRNA:   3'- uuuUUUCGGGCGUC--------------CCCGGGUUUUCg -5'
1631 5' -53 NC_001347.2 + 47173 0.73 0.788497
Target:  5'- aGAAGAGGa--GCGGGGcGUCCGAAGGCg -3'
miRNA:   3'- -UUUUUUCgggCGUCCC-CGGGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 140604 0.71 0.84122
Target:  5'- cGAGAcGUgaGCGGGGGCCCG--AGCg -3'
miRNA:   3'- uUUUUuCGggCGUCCCCGGGUuuUCG- -5'
1631 5' -53 NC_001347.2 + 2107 0.71 0.857316
Target:  5'- -----cGCCgGCGGGGGCgCGAuuuGCg -3'
miRNA:   3'- uuuuuuCGGgCGUCCCCGgGUUuu-CG- -5'
1631 5' -53 NC_001347.2 + 135821 0.71 0.865052
Target:  5'- cGGGAAGCCgGCGGaGGUcgCCGGGAGCa -3'
miRNA:   3'- uUUUUUCGGgCGUCcCCG--GGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 112247 0.71 0.865052
Target:  5'- aGGAAGAGgCCGCAGaGGGaagagccgCCGAAAGUa -3'
miRNA:   3'- -UUUUUUCgGGCGUC-CCCg-------GGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 47576 0.71 0.865052
Target:  5'- gGAGAGGGCCUGUcGGagauGGCCguGAGGCa -3'
miRNA:   3'- -UUUUUUCGGGCGuCC----CCGGguUUUCG- -5'
1631 5' -53 NC_001347.2 + 5624 0.71 0.871831
Target:  5'- cGAGAAGGCCCGCAcggucuuccaagcGGGGaCCUGuugcucuGGCg -3'
miRNA:   3'- -UUUUUUCGGGCGU-------------CCCC-GGGUuu-----UCG- -5'
1631 5' -53 NC_001347.2 + 773 0.7 0.893784
Target:  5'- -----cGCCCGCGGcacacGGGCgaCGAAGGCg -3'
miRNA:   3'- uuuuuuCGGGCGUC-----CCCGg-GUUUUCG- -5'
1631 5' -53 NC_001347.2 + 136497 0.7 0.906755
Target:  5'- ----uGGCCCGCGcaugcgccccGGGGCCCcu-GGUu -3'
miRNA:   3'- uuuuuUCGGGCGU----------CCCCGGGuuuUCG- -5'
1631 5' -53 NC_001347.2 + 924 0.7 0.906755
Target:  5'- -----cGgCCGC-GGGGCCgGAGGGCc -3'
miRNA:   3'- uuuuuuCgGGCGuCCCCGGgUUUUCG- -5'
1631 5' -53 NC_001347.2 + 117019 0.69 0.918758
Target:  5'- ----cAGCCagGCAGGucaGGCCCGAAcGCa -3'
miRNA:   3'- uuuuuUCGGg-CGUCC---CCGGGUUUuCG- -5'
1631 5' -53 NC_001347.2 + 82774 0.69 0.924392
Target:  5'- -cGAAGGCCCGC-GGGGUcuuuuuucaCCGAccGCc -3'
miRNA:   3'- uuUUUUCGGGCGuCCCCG---------GGUUuuCG- -5'
1631 5' -53 NC_001347.2 + 151234 0.69 0.92978
Target:  5'- cGGAGGGGCUCGaaacaucgucaGGGGGCUCGAAcgaacGGCg -3'
miRNA:   3'- -UUUUUUCGGGCg----------UCCCCGGGUUU-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.