miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1631 5' -53 NC_001347.2 + 154695 0.69 0.939819
Target:  5'- ---uGAGCgCCGCAcGGGGCgCGuaacugcauuuGAAGCa -3'
miRNA:   3'- uuuuUUCG-GGCGU-CCCCGgGU-----------UUUCG- -5'
1631 5' -53 NC_001347.2 + 208666 0.69 0.939819
Target:  5'- -cGAAAGCCagguCGCAGGagcGGUCCGAGuGGCg -3'
miRNA:   3'- uuUUUUCGG----GCGUCC---CCGGGUUU-UCG- -5'
1631 5' -53 NC_001347.2 + 197138 0.68 0.944923
Target:  5'- ---cGGGCCCGCcgucgucgccgccccGGGGCCCucgguGCg -3'
miRNA:   3'- uuuuUUCGGGCGu--------------CCCCGGGuuuu-CG- -5'
1631 5' -53 NC_001347.2 + 126867 0.68 0.953054
Target:  5'- ----cAGCCCGCAcggcuuGGGGCUgGccGGCu -3'
miRNA:   3'- uuuuuUCGGGCGU------CCCCGGgUuuUCG- -5'
1631 5' -53 NC_001347.2 + 110101 0.68 0.956991
Target:  5'- -----cGCCCGguGaGGGaCCCucgucGGAAGCg -3'
miRNA:   3'- uuuuuuCGGGCguC-CCC-GGG-----UUUUCG- -5'
1631 5' -53 NC_001347.2 + 185351 0.68 0.960696
Target:  5'- cGAGcAGGCcgccgCCGUGGGGGCCgCGGAGGg -3'
miRNA:   3'- -UUUuUUCG-----GGCGUCCCCGG-GUUUUCg -5'
1631 5' -53 NC_001347.2 + 172523 0.68 0.960696
Target:  5'- -----uGCCUcuuaGuCGGGGGCCCGcuGGCu -3'
miRNA:   3'- uuuuuuCGGG----C-GUCCCCGGGUuuUCG- -5'
1631 5' -53 NC_001347.2 + 13735 0.67 0.964174
Target:  5'- cGAGAGguAGCCaacaGCAGGGaGCCagauGGCg -3'
miRNA:   3'- -UUUUU--UCGGg---CGUCCC-CGGguuuUCG- -5'
1631 5' -53 NC_001347.2 + 125667 0.67 0.964174
Target:  5'- aGAAAAGGUUCGCAGGucGGCCgGGGugaucuccAGCu -3'
miRNA:   3'- -UUUUUUCGGGCGUCC--CCGGgUUU--------UCG- -5'
1631 5' -53 NC_001347.2 + 206697 0.67 0.967431
Target:  5'- ---cGGGCCUcUGGGGGCCgCAcGGAGCg -3'
miRNA:   3'- uuuuUUCGGGcGUCCCCGG-GU-UUUCG- -5'
1631 5' -53 NC_001347.2 + 109685 0.67 0.967431
Target:  5'- ----uGGCCCGCAaccuGGuGCCCAugguGGCu -3'
miRNA:   3'- uuuuuUCGGGCGUc---CC-CGGGUuu--UCG- -5'
1631 5' -53 NC_001347.2 + 142581 0.67 0.967431
Target:  5'- -cGGGAGCa-GCGGGGGCggCGGGGGCa -3'
miRNA:   3'- uuUUUUCGggCGUCCCCGg-GUUUUCG- -5'
1631 5' -53 NC_001347.2 + 136082 0.67 0.970178
Target:  5'- gGGAcgGGCCCGCGGacggaccggcgccGGGCCUcggccgggGAGGGUg -3'
miRNA:   3'- -UUUuuUCGGGCGUC-------------CCCGGG--------UUUUCG- -5'
1631 5' -53 NC_001347.2 + 92251 0.67 0.970473
Target:  5'- -----uGCCCGCAGGccguGGCCgCcgccauGAGGCg -3'
miRNA:   3'- uuuuuuCGGGCGUCC----CCGG-Gu-----UUUCG- -5'
1631 5' -53 NC_001347.2 + 16056 0.67 0.973305
Target:  5'- ------uCCUGCAGGuacGGCCCGGcAGCa -3'
miRNA:   3'- uuuuuucGGGCGUCC---CCGGGUUuUCG- -5'
1631 5' -53 NC_001347.2 + 135687 0.67 0.975936
Target:  5'- aAGGGGAGCUgGguGGGGgaucCCCGGucGCc -3'
miRNA:   3'- -UUUUUUCGGgCguCCCC----GGGUUuuCG- -5'
1631 5' -53 NC_001347.2 + 38775 0.67 0.975936
Target:  5'- -----cGCgCGCGGGGuGCCCAcgcccAGCc -3'
miRNA:   3'- uuuuuuCGgGCGUCCC-CGGGUuu---UCG- -5'
1631 5' -53 NC_001347.2 + 73714 0.67 0.975936
Target:  5'- --cGGGGUCCGCGGGcaccGCcgCCGGAGGCg -3'
miRNA:   3'- uuuUUUCGGGCGUCCc---CG--GGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 87867 0.67 0.975936
Target:  5'- uAGAGAGCUCGCAGa-GCUCGGGAuGCg -3'
miRNA:   3'- uUUUUUCGGGCGUCccCGGGUUUU-CG- -5'
1631 5' -53 NC_001347.2 + 137059 0.66 0.98062
Target:  5'- ---uAGGCuuGuCAGGGGUCacgugAGAAGCg -3'
miRNA:   3'- uuuuUUCGggC-GUCCCCGGg----UUUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.