miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1631 5' -53 NC_001347.2 + 206697 0.67 0.967431
Target:  5'- ---cGGGCCUcUGGGGGCCgCAcGGAGCg -3'
miRNA:   3'- uuuuUUCGGGcGUCCCCGG-GU-UUUCG- -5'
1631 5' -53 NC_001347.2 + 109685 0.67 0.967431
Target:  5'- ----uGGCCCGCAaccuGGuGCCCAugguGGCu -3'
miRNA:   3'- uuuuuUCGGGCGUc---CC-CGGGUuu--UCG- -5'
1631 5' -53 NC_001347.2 + 125667 0.67 0.964174
Target:  5'- aGAAAAGGUUCGCAGGucGGCCgGGGugaucuccAGCu -3'
miRNA:   3'- -UUUUUUCGGGCGUCC--CCGGgUUU--------UCG- -5'
1631 5' -53 NC_001347.2 + 13735 0.67 0.964174
Target:  5'- cGAGAGguAGCCaacaGCAGGGaGCCagauGGCg -3'
miRNA:   3'- -UUUUU--UCGGg---CGUCCC-CGGguuuUCG- -5'
1631 5' -53 NC_001347.2 + 185351 0.68 0.960696
Target:  5'- cGAGcAGGCcgccgCCGUGGGGGCCgCGGAGGg -3'
miRNA:   3'- -UUUuUUCG-----GGCGUCCCCGG-GUUUUCg -5'
1631 5' -53 NC_001347.2 + 172523 0.68 0.960696
Target:  5'- -----uGCCUcuuaGuCGGGGGCCCGcuGGCu -3'
miRNA:   3'- uuuuuuCGGG----C-GUCCCCGGGUuuUCG- -5'
1631 5' -53 NC_001347.2 + 110101 0.68 0.956991
Target:  5'- -----cGCCCGguGaGGGaCCCucgucGGAAGCg -3'
miRNA:   3'- uuuuuuCGGGCguC-CCC-GGG-----UUUUCG- -5'
1631 5' -53 NC_001347.2 + 126867 0.68 0.953054
Target:  5'- ----cAGCCCGCAcggcuuGGGGCUgGccGGCu -3'
miRNA:   3'- uuuuuUCGGGCGU------CCCCGGgUuuUCG- -5'
1631 5' -53 NC_001347.2 + 197138 0.68 0.944923
Target:  5'- ---cGGGCCCGCcgucgucgccgccccGGGGCCCucgguGCg -3'
miRNA:   3'- uuuuUUCGGGCGu--------------CCCCGGGuuuu-CG- -5'
1631 5' -53 NC_001347.2 + 154695 0.69 0.939819
Target:  5'- ---uGAGCgCCGCAcGGGGCgCGuaacugcauuuGAAGCa -3'
miRNA:   3'- uuuuUUCG-GGCGU-CCCCGgGU-----------UUUCG- -5'
1631 5' -53 NC_001347.2 + 208666 0.69 0.939819
Target:  5'- -cGAAAGCCagguCGCAGGagcGGUCCGAGuGGCg -3'
miRNA:   3'- uuUUUUCGG----GCGUCC---CCGGGUUU-UCG- -5'
1631 5' -53 NC_001347.2 + 151234 0.69 0.92978
Target:  5'- cGGAGGGGCUCGaaacaucgucaGGGGGCUCGAAcgaacGGCg -3'
miRNA:   3'- -UUUUUUCGGGCg----------UCCCCGGGUUU-----UCG- -5'
1631 5' -53 NC_001347.2 + 82774 0.69 0.924392
Target:  5'- -cGAAGGCCCGC-GGGGUcuuuuuucaCCGAccGCc -3'
miRNA:   3'- uuUUUUCGGGCGuCCCCG---------GGUUuuCG- -5'
1631 5' -53 NC_001347.2 + 117019 0.69 0.918758
Target:  5'- ----cAGCCagGCAGGucaGGCCCGAAcGCa -3'
miRNA:   3'- uuuuuUCGGg-CGUCC---CCGGGUUUuCG- -5'
1631 5' -53 NC_001347.2 + 136497 0.7 0.906755
Target:  5'- ----uGGCCCGCGcaugcgccccGGGGCCCcu-GGUu -3'
miRNA:   3'- uuuuuUCGGGCGU----------CCCCGGGuuuUCG- -5'
1631 5' -53 NC_001347.2 + 924 0.7 0.906755
Target:  5'- -----cGgCCGC-GGGGCCgGAGGGCc -3'
miRNA:   3'- uuuuuuCgGGCGuCCCCGGgUUUUCG- -5'
1631 5' -53 NC_001347.2 + 773 0.7 0.893784
Target:  5'- -----cGCCCGCGGcacacGGGCgaCGAAGGCg -3'
miRNA:   3'- uuuuuuCGGGCGUC-----CCCGg-GUUUUCG- -5'
1631 5' -53 NC_001347.2 + 5624 0.71 0.871831
Target:  5'- cGAGAAGGCCCGCAcggucuuccaagcGGGGaCCUGuugcucuGGCg -3'
miRNA:   3'- -UUUUUUCGGGCGU-------------CCCC-GGGUuu-----UCG- -5'
1631 5' -53 NC_001347.2 + 112247 0.71 0.865052
Target:  5'- aGGAAGAGgCCGCAGaGGGaagagccgCCGAAAGUa -3'
miRNA:   3'- -UUUUUUCgGGCGUC-CCCg-------GGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 135821 0.71 0.865052
Target:  5'- cGGGAAGCCgGCGGaGGUcgCCGGGAGCa -3'
miRNA:   3'- uUUUUUCGGgCGUCcCCG--GGUUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.