Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1631 | 5' | -53 | NC_001347.2 | + | 773 | 0.7 | 0.893784 |
Target: 5'- -----cGCCCGCGGcacacGGGCgaCGAAGGCg -3' miRNA: 3'- uuuuuuCGGGCGUC-----CCCGg-GUUUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 924 | 0.7 | 0.906755 |
Target: 5'- -----cGgCCGC-GGGGCCgGAGGGCc -3' miRNA: 3'- uuuuuuCgGGCGuCCCCGGgUUUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 2107 | 0.71 | 0.857316 |
Target: 5'- -----cGCCgGCGGGGGCgCGAuuuGCg -3' miRNA: 3'- uuuuuuCGGgCGUCCCCGgGUUuu-CG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 2404 | 0.66 | 0.987904 |
Target: 5'- --cGAGGCCgCGCGGcGGcugcuGCCCGAgcuggaccgcGAGCa -3' miRNA: 3'- uuuUUUCGG-GCGUC-CC-----CGGGUU----------UUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 5624 | 0.71 | 0.871831 |
Target: 5'- cGAGAAGGCCCGCAcggucuuccaagcGGGGaCCUGuugcucuGGCg -3' miRNA: 3'- -UUUUUUCGGGCGU-------------CCCC-GGGUuu-----UCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 13131 | 0.74 | 0.72056 |
Target: 5'- cAAAcAGCCCGCuacGGGCCCGugcGGCg -3' miRNA: 3'- uUUUuUCGGGCGuc-CCCGGGUuu-UCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 13735 | 0.67 | 0.964174 |
Target: 5'- cGAGAGguAGCCaacaGCAGGGaGCCagauGGCg -3' miRNA: 3'- -UUUUU--UCGGg---CGUCCC-CGGguuuUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 16056 | 0.67 | 0.973305 |
Target: 5'- ------uCCUGCAGGuacGGCCCGGcAGCa -3' miRNA: 3'- uuuuuucGGGCGUCC---CCGGGUUuUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 36682 | 0.66 | 0.982689 |
Target: 5'- ---cGGGCuCCgGCGGGuGGCCU--GAGCa -3' miRNA: 3'- uuuuUUCG-GG-CGUCC-CCGGGuuUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 38775 | 0.67 | 0.975936 |
Target: 5'- -----cGCgCGCGGGGuGCCCAcgcccAGCc -3' miRNA: 3'- uuuuuuCGgGCGUCCC-CGGGUuu---UCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 39353 | 0.66 | 0.98062 |
Target: 5'- ----cGGCCCGCGGGGuucuaCCCGGuGGa -3' miRNA: 3'- uuuuuUCGGGCGUCCCc----GGGUUuUCg -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 44377 | 0.66 | 0.986323 |
Target: 5'- -----cGCCCGCcGGGGCuucuggagaacgCCGGGgcAGCa -3' miRNA: 3'- uuuuuuCGGGCGuCCCCG------------GGUUU--UCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 47173 | 0.73 | 0.788497 |
Target: 5'- aGAAGAGGa--GCGGGGcGUCCGAAGGCg -3' miRNA: 3'- -UUUUUUCgggCGUCCC-CGGGUUUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 47576 | 0.71 | 0.865052 |
Target: 5'- gGAGAGGGCCUGUcGGagauGGCCguGAGGCa -3' miRNA: 3'- -UUUUUUCGGGCGuCC----CCGGguUUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 60547 | 0.66 | 0.982086 |
Target: 5'- uGGAAGGUagauuacgacagauCCGUugcgguuGGGCCCAAAAGCu -3' miRNA: 3'- uUUUUUCG--------------GGCGuc-----CCCGGGUUUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 73714 | 0.67 | 0.975936 |
Target: 5'- --cGGGGUCCGCGGGcaccGCcgCCGGAGGCg -3' miRNA: 3'- uuuUUUCGGGCGUCCc---CG--GGUUUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 81696 | 0.66 | 0.98062 |
Target: 5'- -cGAGAGCgCGCAGGGuuCCAccuccAGCu -3' miRNA: 3'- uuUUUUCGgGCGUCCCcgGGUuu---UCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 82774 | 0.69 | 0.924392 |
Target: 5'- -cGAAGGCCCGC-GGGGUcuuuuuucaCCGAccGCc -3' miRNA: 3'- uuUUUUCGGGCGuCCCCG---------GGUUuuCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 87867 | 0.67 | 0.975936 |
Target: 5'- uAGAGAGCUCGCAGa-GCUCGGGAuGCg -3' miRNA: 3'- uUUUUUCGGGCGUCccCGGGUUUU-CG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 92251 | 0.67 | 0.970473 |
Target: 5'- -----uGCCCGCAGGccguGGCCgCcgccauGAGGCg -3' miRNA: 3'- uuuuuuCGGGCGUCC----CCGG-Gu-----UUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home