miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1631 5' -53 NC_001347.2 + 210728 0.78 0.476671
Target:  5'- cAAGAAGCgaCCGCAGuGGGCCCAc-AGCa -3'
miRNA:   3'- uUUUUUCG--GGCGUC-CCCGGGUuuUCG- -5'
1631 5' -53 NC_001347.2 + 208666 0.69 0.939819
Target:  5'- -cGAAAGCCagguCGCAGGagcGGUCCGAGuGGCg -3'
miRNA:   3'- uuUUUUCGG----GCGUCC---CCGGGUUU-UCG- -5'
1631 5' -53 NC_001347.2 + 206697 0.67 0.967431
Target:  5'- ---cGGGCCUcUGGGGGCCgCAcGGAGCg -3'
miRNA:   3'- uuuuUUCGGGcGUCCCCGG-GU-UUUCG- -5'
1631 5' -53 NC_001347.2 + 197138 0.68 0.944923
Target:  5'- ---cGGGCCCGCcgucgucgccgccccGGGGCCCucgguGCg -3'
miRNA:   3'- uuuuUUCGGGCGu--------------CCCCGGGuuuu-CG- -5'
1631 5' -53 NC_001347.2 + 191760 0.66 0.982689
Target:  5'- -cGAuAGuCCUGCucGGGGUCCAuguGGCg -3'
miRNA:   3'- uuUUuUC-GGGCGu-CCCCGGGUuu-UCG- -5'
1631 5' -53 NC_001347.2 + 190162 0.66 0.982689
Target:  5'- -----uGCCgGCaugGGGGGCgCCAAAAcGCc -3'
miRNA:   3'- uuuuuuCGGgCG---UCCCCG-GGUUUU-CG- -5'
1631 5' -53 NC_001347.2 + 185487 0.75 0.638408
Target:  5'- ----uGGCgCGCAGGGGCuCCGAcguGGCg -3'
miRNA:   3'- uuuuuUCGgGCGUCCCCG-GGUUu--UCG- -5'
1631 5' -53 NC_001347.2 + 185351 0.68 0.960696
Target:  5'- cGAGcAGGCcgccgCCGUGGGGGCCgCGGAGGg -3'
miRNA:   3'- -UUUuUUCG-----GGCGUCCCCGG-GUUUUCg -5'
1631 5' -53 NC_001347.2 + 180485 0.66 0.986323
Target:  5'- -----cGCCCu--GGGGCCCuucguGGGCa -3'
miRNA:   3'- uuuuuuCGGGcguCCCCGGGuu---UUCG- -5'
1631 5' -53 NC_001347.2 + 172523 0.68 0.960696
Target:  5'- -----uGCCUcuuaGuCGGGGGCCCGcuGGCu -3'
miRNA:   3'- uuuuuuCGGG----C-GUCCCCGGGUuuUCG- -5'
1631 5' -53 NC_001347.2 + 164826 0.66 0.987904
Target:  5'- --cAGGGCCgGCAGGGcCCCuucgccGCa -3'
miRNA:   3'- uuuUUUCGGgCGUCCCcGGGuuuu--CG- -5'
1631 5' -53 NC_001347.2 + 155566 0.74 0.72758
Target:  5'- --cGGAGCCCGCGGcugguacgagcgguGGGCUCGAGGGg -3'
miRNA:   3'- uuuUUUCGGGCGUC--------------CCCGGGUUUUCg -5'
1631 5' -53 NC_001347.2 + 154695 0.69 0.939819
Target:  5'- ---uGAGCgCCGCAcGGGGCgCGuaacugcauuuGAAGCa -3'
miRNA:   3'- uuuuUUCG-GGCGU-CCCCGgGU-----------UUUCG- -5'
1631 5' -53 NC_001347.2 + 151234 0.69 0.92978
Target:  5'- cGGAGGGGCUCGaaacaucgucaGGGGGCUCGAAcgaacGGCg -3'
miRNA:   3'- -UUUUUUCGGGCg----------UCCCCGGGUUU-----UCG- -5'
1631 5' -53 NC_001347.2 + 142581 0.67 0.967431
Target:  5'- -cGGGAGCa-GCGGGGGCggCGGGGGCa -3'
miRNA:   3'- uuUUUUCGggCGUCCCCGg-GUUUUCG- -5'
1631 5' -53 NC_001347.2 + 140604 0.71 0.84122
Target:  5'- cGAGAcGUgaGCGGGGGCCCG--AGCg -3'
miRNA:   3'- uUUUUuCGggCGUCCCCGGGUuuUCG- -5'
1631 5' -53 NC_001347.2 + 138962 0.74 0.72056
Target:  5'- ----uAGCgCCGguGGGGCCCGc-GGCu -3'
miRNA:   3'- uuuuuUCG-GGCguCCCCGGGUuuUCG- -5'
1631 5' -53 NC_001347.2 + 137059 0.66 0.98062
Target:  5'- ---uAGGCuuGuCAGGGGUCacgugAGAAGCg -3'
miRNA:   3'- uuuuUUCGggC-GUCCCCGGg----UUUUCG- -5'
1631 5' -53 NC_001347.2 + 136497 0.7 0.906755
Target:  5'- ----uGGCCCGCGcaugcgccccGGGGCCCcu-GGUu -3'
miRNA:   3'- uuuuuUCGGGCGU----------CCCCGGGuuuUCG- -5'
1631 5' -53 NC_001347.2 + 136082 0.67 0.970178
Target:  5'- gGGAcgGGCCCGCGGacggaccggcgccGGGCCUcggccgggGAGGGUg -3'
miRNA:   3'- -UUUuuUCGGGCGUC-------------CCCGGG--------UUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.