miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1631 5' -53 NC_001347.2 + 135821 0.71 0.865052
Target:  5'- cGGGAAGCCgGCGGaGGUcgCCGGGAGCa -3'
miRNA:   3'- uUUUUUCGGgCGUCcCCG--GGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 135687 0.67 0.975936
Target:  5'- aAGGGGAGCUgGguGGGGgaucCCCGGucGCc -3'
miRNA:   3'- -UUUUUUCGGgCguCCCC----GGGUUuuCG- -5'
1631 5' -53 NC_001347.2 + 135643 1.09 0.006855
Target:  5'- aAAAAAAGCCCGCAGGGGCCCAAAAGCc -3'
miRNA:   3'- -UUUUUUCGGGCGUCCCCGGGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 135194 0.76 0.586598
Target:  5'- ----cAGCCUGguGGGGUCC-GAGGCg -3'
miRNA:   3'- uuuuuUCGGGCguCCCCGGGuUUUCG- -5'
1631 5' -53 NC_001347.2 + 127116 0.66 0.982689
Target:  5'- ---cGAGCCCGCGcuGGCaCCGcugcuGGAGCg -3'
miRNA:   3'- uuuuUUCGGGCGUccCCG-GGU-----UUUCG- -5'
1631 5' -53 NC_001347.2 + 126867 0.68 0.953054
Target:  5'- ----cAGCCCGCAcggcuuGGGGCUgGccGGCu -3'
miRNA:   3'- uuuuuUCGGGCGU------CCCCGGgUuuUCG- -5'
1631 5' -53 NC_001347.2 + 125667 0.67 0.964174
Target:  5'- aGAAAAGGUUCGCAGGucGGCCgGGGugaucuccAGCu -3'
miRNA:   3'- -UUUUUUCGGGCGUCC--CCGGgUUU--------UCG- -5'
1631 5' -53 NC_001347.2 + 117019 0.69 0.918758
Target:  5'- ----cAGCCagGCAGGucaGGCCCGAAcGCa -3'
miRNA:   3'- uuuuuUCGGg-CGUCC---CCGGGUUUuCG- -5'
1631 5' -53 NC_001347.2 + 112247 0.71 0.865052
Target:  5'- aGGAAGAGgCCGCAGaGGGaagagccgCCGAAAGUa -3'
miRNA:   3'- -UUUUUUCgGGCGUC-CCCg-------GGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 110101 0.68 0.956991
Target:  5'- -----cGCCCGguGaGGGaCCCucgucGGAAGCg -3'
miRNA:   3'- uuuuuuCGGGCguC-CCC-GGG-----UUUUCG- -5'
1631 5' -53 NC_001347.2 + 109685 0.67 0.967431
Target:  5'- ----uGGCCCGCAaccuGGuGCCCAugguGGCu -3'
miRNA:   3'- uuuuuUCGGGCGUc---CC-CGGGUuu--UCG- -5'
1631 5' -53 NC_001347.2 + 92251 0.67 0.970473
Target:  5'- -----uGCCCGCAGGccguGGCCgCcgccauGAGGCg -3'
miRNA:   3'- uuuuuuCGGGCGUCC----CCGG-Gu-----UUUCG- -5'
1631 5' -53 NC_001347.2 + 87867 0.67 0.975936
Target:  5'- uAGAGAGCUCGCAGa-GCUCGGGAuGCg -3'
miRNA:   3'- uUUUUUCGGGCGUCccCGGGUUUU-CG- -5'
1631 5' -53 NC_001347.2 + 82774 0.69 0.924392
Target:  5'- -cGAAGGCCCGC-GGGGUcuuuuuucaCCGAccGCc -3'
miRNA:   3'- uuUUUUCGGGCGuCCCCG---------GGUUuuCG- -5'
1631 5' -53 NC_001347.2 + 81696 0.66 0.98062
Target:  5'- -cGAGAGCgCGCAGGGuuCCAccuccAGCu -3'
miRNA:   3'- uuUUUUCGgGCGUCCCcgGGUuu---UCG- -5'
1631 5' -53 NC_001347.2 + 73714 0.67 0.975936
Target:  5'- --cGGGGUCCGCGGGcaccGCcgCCGGAGGCg -3'
miRNA:   3'- uuuUUUCGGGCGUCCc---CG--GGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 60547 0.66 0.982086
Target:  5'- uGGAAGGUagauuacgacagauCCGUugcgguuGGGCCCAAAAGCu -3'
miRNA:   3'- uUUUUUCG--------------GGCGuc-----CCCGGGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 47576 0.71 0.865052
Target:  5'- gGAGAGGGCCUGUcGGagauGGCCguGAGGCa -3'
miRNA:   3'- -UUUUUUCGGGCGuCC----CCGGguUUUCG- -5'
1631 5' -53 NC_001347.2 + 47173 0.73 0.788497
Target:  5'- aGAAGAGGa--GCGGGGcGUCCGAAGGCg -3'
miRNA:   3'- -UUUUUUCgggCGUCCC-CGGGUUUUCG- -5'
1631 5' -53 NC_001347.2 + 44377 0.66 0.986323
Target:  5'- -----cGCCCGCcGGGGCuucuggagaacgCCGGGgcAGCa -3'
miRNA:   3'- uuuuuuCGGGCGuCCCCG------------GGUUU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.