Results 41 - 51 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1631 | 5' | -53 | NC_001347.2 | + | 13735 | 0.67 | 0.964174 |
Target: 5'- cGAGAGguAGCCaacaGCAGGGaGCCagauGGCg -3' miRNA: 3'- -UUUUU--UCGGg---CGUCCC-CGGguuuUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 125667 | 0.67 | 0.964174 |
Target: 5'- aGAAAAGGUUCGCAGGucGGCCgGGGugaucuccAGCu -3' miRNA: 3'- -UUUUUUCGGGCGUCC--CCGGgUUU--------UCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 142581 | 0.67 | 0.967431 |
Target: 5'- -cGGGAGCa-GCGGGGGCggCGGGGGCa -3' miRNA: 3'- uuUUUUCGggCGUCCCCGg-GUUUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 206697 | 0.67 | 0.967431 |
Target: 5'- ---cGGGCCUcUGGGGGCCgCAcGGAGCg -3' miRNA: 3'- uuuuUUCGGGcGUCCCCGG-GU-UUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 109685 | 0.67 | 0.967431 |
Target: 5'- ----uGGCCCGCAaccuGGuGCCCAugguGGCu -3' miRNA: 3'- uuuuuUCGGGCGUc---CC-CGGGUuu--UCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 136082 | 0.67 | 0.970178 |
Target: 5'- gGGAcgGGCCCGCGGacggaccggcgccGGGCCUcggccgggGAGGGUg -3' miRNA: 3'- -UUUuuUCGGGCGUC-------------CCCGGG--------UUUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 92251 | 0.67 | 0.970473 |
Target: 5'- -----uGCCCGCAGGccguGGCCgCcgccauGAGGCg -3' miRNA: 3'- uuuuuuCGGGCGUCC----CCGG-Gu-----UUUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 16056 | 0.67 | 0.973305 |
Target: 5'- ------uCCUGCAGGuacGGCCCGGcAGCa -3' miRNA: 3'- uuuuuucGGGCGUCC---CCGGGUUuUCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 135687 | 0.67 | 0.975936 |
Target: 5'- aAGGGGAGCUgGguGGGGgaucCCCGGucGCc -3' miRNA: 3'- -UUUUUUCGGgCguCCCC----GGGUUuuCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 38775 | 0.67 | 0.975936 |
Target: 5'- -----cGCgCGCGGGGuGCCCAcgcccAGCc -3' miRNA: 3'- uuuuuuCGgGCGUCCC-CGGGUuu---UCG- -5' |
|||||||
1631 | 5' | -53 | NC_001347.2 | + | 2404 | 0.66 | 0.987904 |
Target: 5'- --cGAGGCCgCGCGGcGGcugcuGCCCGAgcuggaccgcGAGCa -3' miRNA: 3'- uuuUUUCGG-GCGUC-CC-----CGGGUU----------UUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home