miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16310 5' -58.4 NC_004084.1 + 28902 0.66 0.576392
Target:  5'- gCCGCGCgAUCgAGGcUGGCuGgagcCCCAa -3'
miRNA:   3'- aGGCGCGgUAGgUCC-AUCG-Cau--GGGU- -5'
16310 5' -58.4 NC_004084.1 + 6140 0.66 0.565762
Target:  5'- uUCCGCGaCCAgcgCCGGGguuccUGGCGaucggGCuCCAg -3'
miRNA:   3'- -AGGCGC-GGUa--GGUCC-----AUCGCa----UG-GGU- -5'
16310 5' -58.4 NC_004084.1 + 7224 0.66 0.544663
Target:  5'- cCCGCGCCAgcgCCGaccucgacgaucGGc-GCGUGCUCGg -3'
miRNA:   3'- aGGCGCGGUa--GGU------------CCauCGCAUGGGU- -5'
16310 5' -58.4 NC_004084.1 + 57477 0.67 0.493168
Target:  5'- cCCGCGaCCuccUCCGGG-AGCGUcACCa- -3'
miRNA:   3'- aGGCGC-GGu--AGGUCCaUCGCA-UGGgu -5'
16310 5' -58.4 NC_004084.1 + 30893 0.68 0.453635
Target:  5'- aCCG-GuCCAUCCAGGUAGcCGUGguCCUc -3'
miRNA:   3'- aGGCgC-GGUAGGUCCAUC-GCAU--GGGu -5'
16310 5' -58.4 NC_004084.1 + 47925 0.68 0.444022
Target:  5'- gCCGCGCgAUCCAGGgcaaUGGCGaGCg-- -3'
miRNA:   3'- aGGCGCGgUAGGUCC----AUCGCaUGggu -5'
16310 5' -58.4 NC_004084.1 + 47740 0.68 0.444022
Target:  5'- cCCGaugacCGCCAUCCGGuUGGCGcgAUCCAu -3'
miRNA:   3'- aGGC-----GCGGUAGGUCcAUCGCa-UGGGU- -5'
16310 5' -58.4 NC_004084.1 + 36460 0.69 0.380126
Target:  5'- aUCCGCGUCGUCCGGG-AGaucucgauCCCGc -3'
miRNA:   3'- -AGGCGCGGUAGGUCCaUCgcau----GGGU- -5'
16310 5' -58.4 NC_004084.1 + 10688 0.69 0.371512
Target:  5'- --aGCGaCCGUUCGGGUAGCcgGUGCUCGg -3'
miRNA:   3'- aggCGC-GGUAGGUCCAUCG--CAUGGGU- -5'
16310 5' -58.4 NC_004084.1 + 29947 0.71 0.306758
Target:  5'- cUCCGUGCCAgucCCAGGUGauguccucgucgcGCGUGUCCu -3'
miRNA:   3'- -AGGCGCGGUa--GGUCCAU-------------CGCAUGGGu -5'
16310 5' -58.4 NC_004084.1 + 57294 0.72 0.263945
Target:  5'- aCCGCGCCAUCCAGGaccuccucgacgAGgGggacGCCUAc -3'
miRNA:   3'- aGGCGCGGUAGGUCCa-----------UCgCa---UGGGU- -5'
16310 5' -58.4 NC_004084.1 + 29107 1.08 0.000603
Target:  5'- cUCCGCGCCAUCCAGGUAGCGUACCCAc -3'
miRNA:   3'- -AGGCGCGGUAGGUCCAUCGCAUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.