miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16311 5' -54.4 NC_004084.1 + 9533 0.68 0.650271
Target:  5'- uCGcCUCGCCGUCGuGCauCGuCGCGAGCc -3'
miRNA:   3'- -GC-GAGUGGUAGCuUGacGC-GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 1552 0.68 0.628196
Target:  5'- gGCgacgGCCGUCGAGCcggaGCcCGCGAACg -3'
miRNA:   3'- gCGag--UGGUAGCUUGa---CGcGCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 28680 0.68 0.628196
Target:  5'- aGCUCAaCGUCGAGCacUGgGCGGACg -3'
miRNA:   3'- gCGAGUgGUAGCUUGacGCgCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 29198 0.69 0.606133
Target:  5'- uGCUCGgCGUCGAugUuccagaGCGCGUcGACg -3'
miRNA:   3'- gCGAGUgGUAGCUugA------CGCGCGcUUG- -5'
16311 5' -54.4 NC_004084.1 + 28996 0.69 0.584161
Target:  5'- aGCUCGCCGUCGA-CgGCaacCGCGAc- -3'
miRNA:   3'- gCGAGUGGUAGCUuGaCGc--GCGCUug -5'
16311 5' -54.4 NC_004084.1 + 46166 0.69 0.580877
Target:  5'- uCGCUCACCG-CGAACUugcccagcugguagGCG-GCGAGa -3'
miRNA:   3'- -GCGAGUGGUaGCUUGA--------------CGCgCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 23598 0.69 0.573231
Target:  5'- uGCUcCGCCGg-GAACUGCGCuCGAAg -3'
miRNA:   3'- gCGA-GUGGUagCUUGACGCGcGCUUg -5'
16311 5' -54.4 NC_004084.1 + 30051 0.69 0.569961
Target:  5'- cCGCUCgcgucguugugccaGCCGUCGAgGCUGC-CGCGGu- -3'
miRNA:   3'- -GCGAG--------------UGGUAGCU-UGACGcGCGCUug -5'
16311 5' -54.4 NC_004084.1 + 29442 0.7 0.562349
Target:  5'- aGCuUCACCG-CGAAC-GCGgCGUGGGCg -3'
miRNA:   3'- gCG-AGUGGUaGCUUGaCGC-GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 43763 0.7 0.551524
Target:  5'- aCGCUCGCgggCAUCG-ACUGgGCGCucGCc -3'
miRNA:   3'- -GCGAGUG---GUAGCuUGACgCGCGcuUG- -5'
16311 5' -54.4 NC_004084.1 + 3865 0.7 0.551524
Target:  5'- aGCUCGCCcUCGGugauACaGCGC-CGGACg -3'
miRNA:   3'- gCGAGUGGuAGCU----UGaCGCGcGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 43984 0.7 0.540763
Target:  5'- aCGCUCuACCG-CGAACUGC-C-CGAGCu -3'
miRNA:   3'- -GCGAG-UGGUaGCUUGACGcGcGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 40585 0.71 0.488161
Target:  5'- aGgUCACCAUCGAACU-CG-GCGAGg -3'
miRNA:   3'- gCgAGUGGUAGCUUGAcGCgCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 39859 0.71 0.488161
Target:  5'- cCGCggCGCCGUCGAgcacgcugaGCUGCaGUGCGGu- -3'
miRNA:   3'- -GCGa-GUGGUAGCU---------UGACG-CGCGCUug -5'
16311 5' -54.4 NC_004084.1 + 13755 0.72 0.400226
Target:  5'- gGCUCGCCcUCGAGgUcGCGCuggGCGGGCu -3'
miRNA:   3'- gCGAGUGGuAGCUUgA-CGCG---CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 10488 0.72 0.400226
Target:  5'- cCGCUCGCCAUUGccCUGgauCGCGCGGc- -3'
miRNA:   3'- -GCGAGUGGUAGCuuGAC---GCGCGCUug -5'
16311 5' -54.4 NC_004084.1 + 11039 0.74 0.347507
Target:  5'- aGCUCGCCGUCGA----CGaCGCGGACg -3'
miRNA:   3'- gCGAGUGGUAGCUugacGC-GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 15756 0.74 0.323072
Target:  5'- aCGCUCGggaggacgUCGUCGGACUGCGcCGCcGACu -3'
miRNA:   3'- -GCGAGU--------GGUAGCUUGACGC-GCGcUUG- -5'
16311 5' -54.4 NC_004084.1 + 27552 0.8 0.146637
Target:  5'- aGCUCGCCAUCGAAC-GUGacgaGCGGGCc -3'
miRNA:   3'- gCGAGUGGUAGCUUGaCGCg---CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 28820 1.11 0.000993
Target:  5'- cCGCUCACCAUCGAACUGCGCGCGAACg -3'
miRNA:   3'- -GCGAGUGGUAGCUUGACGCGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.